>SLC388 (SLC388Q) /CSM/SL/SLC3-D/SLC388Q.Seq.d/
CCCCGTCTGAACCTAATGTAGTTTGGAGATAGTAATAATACATTAAAACATGAATAAAAC
TATTTACTAGTGTACACCACCAACTACCAACTAACCATTGGTCATGAAGCCATTGCNNTG
TTACTGGTACCATTGCCATATGATGGAAAATATGCAAAAAGATGATTGGCTTTTTCTTTA
AAGCTAAAATGACAGTGTCAACCAATTCATAGTATTTTGATAAGTAGAAAATGTAGATCC
AAAAACCAATTCTACCTTGTACAGATTGACTTGATTGTTCGCATACCAATGAAAATGCAC
TTTGCTCTAAATATTGTTGGTATGCTGCATACATAACACCTGACATCATTGAAAATGATA
ATATAATTAAATTAATGTTGTGAATAATTGAGAAACCTTTTAAAACCATTCCTTTTTTAT
XXXXXXXXXX

prlnlm*fgdsnntlkhe*nyllvyttnyqltigheaiaxllvplpydgkyakr*lafsl
klk*QCQPIHSILISRKCRSKNQFYLVQIDLIVRIPMKMHFALNIVGMLHT*hltslkmi
i*ln*cce*lrnllkpflf---

Frame A:
prlnlm*fgdsnntlkhe*nyllvyttnyqltigheaiaxllvplpydgkyakr*lafsl
klk*QCQPIHSILISRKCRSKNQFYLVQIDLIVRIPMKMHFALNIVGMLHT*hltslkmi
i*ln*cce*lrnllkpflf---


Frame B:
pv*t*csleiviih*nmnktiy*ctppttn*plvmkplxcywyhchmmenmqkddwlfl*
s*ndsvnqfivf**venvdpktnstlyrlt*lfayq*kctll*illvccihnt*hh*k**
yn*invvnn*etf*nhsff---


Frame C:
psepnvvwr***yikt*iklftsvhhqlptnhws*shcxvtgtiai*wkickkmigfffk
akmtvstns*yfdk*km*iqkpilpctd*ldcshtnenalcskycwyaayitpdiiendn
iiklml*iiekpfktipfl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC388 (SLC388Q) /CSM/SL/SLC3-D/SLC388Q.Seq.d/                        821   0.0
SLA205 (SLA205Q) /CSM/SL/SLA2-A/SLA205Q.Seq.d/                        805   0.0
VFI293 (VFI293Q) /CSM/VF/VFI2-D/VFI293Q.Seq.d/                        769   0.0
VFA435 (VFA435Q) /CSM/VF/VFA4-B/VFA435Q.Seq.d/                        769   0.0
VFA343 (VFA343Q) /CSM/VF/VFA3-B/VFA343Q.Seq.d/                        761   0.0
VSB578 (VSB578Q) /CSM/VS/VSB5-D/VSB578Q.Seq.d/                        270   2e-71
SLD183 (SLD183Q) /CSM/SL/SLD1-D/SLD183Q.Seq.d/                        218   5e-56
SLB264 (SLB264Q) /CSM/SL/SLB2-C/SLB264Q.Seq.d/                        119   4e-26
VHG632 (VHG632Q) /CSM/VH/VHG6-B/VHG632Q.Seq.d/                         38   0.11
AFL612 (AFL612Q) /CSM/AF/AFL6-A/AFL612Q.Seq.d/                         38   0.11

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF187070|AF187070.1 Dictyostelium discoideum steroid isomerase (SRE1) mRNA, complete cds.   220   1e-53  1
BX510958|BX510958.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-87O23.    34   0.013  7
AQ165488|AQ165488.1 HS_3026_A2_E01_MF CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3026 Col=2 Row=I, genomic survey sequence.    42   0.025  2
BX470183|BX470183.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-184M13.    44   0.052  4
BX470171|BX470171.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-22O10.    32   0.055  7
AP003186|AP003186.2 Clostridium perfringens str. 13 DNA, complete genome, section 2/10.    36   0.055  8
AF454824|AF454824.1 Enterococcus faecalis pathogenicity island, complete sequence.    32   0.057  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   0.074  16
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    32   0.097  7
AC099154|AC099154.5 Rattus norvegicus clone CH230-69D17, WORKING DRAFT SEQUENCE, 1 ordered piece.    48   0.099  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CS020179_1(CS020179|pid:none) Sequence 133 from Patent WO2005012...   125   6e-28
CS020177_1(CS020177|pid:none) Sequence 131 from Patent WO2005012...   122   5e-27
AF187070_1(AF187070|pid:none) Dictyostelium discoideum steroid i...    98   8e-20
AC117073_2(AC117073|pid:none) Dictyostelium discoideum chromosom...    86   3e-16
AC116957_93(AC116957|pid:none) Dictyostelium discoideum chromoso...    77   2e-13
CT005253_78(CT005253|pid:none) Leishmania major strain Friedlin,...    76   3e-13
AL031745_82(AL031745|pid:none) Plasmodium falciparum DNA from MA...    75   5e-13
AE017343_12(AE017343|pid:none) Cryptococcus neoformans var. neof...    74   2e-12
AJ890364_77(AJ890364|pid:none) Emiliania huxleyi virus 86 isolat...    73   3e-12
T34200(T34200)hypothetical protein D2024.3 - Caenorhabditis eleg...    72   6e-12

 psg: 0.86  gvh: 0.46  alm: 0.41  top: 0.63  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SLC388 is nuc

>SLC388F.Seq
CCCCGTCTGAACCTAATGTAGTTTGGAGATAGTAATAATACATTAAAACATGAATAAAAC
TATTTACTAGTGTACACCACCAACTACCAACTAACCATTGGTCATGAAGCCATTGCNNTG
TTACTGGTACCATTGCCATATGATGGAAAATATGCAAAAAGATGATTGGCTTTTTCTTTA
AAGCTAAAATGACAGTGTCAACCAATTCATAGTATTTTGATAAGTAGAAAATGTAGATCC
AAAAACCAATTCTACCTTGTACAGATTGACTTGATTGTTCGCATACCAATGAAAATGCAC
TTTGCTCTAAATATTGTTGGTATGCTGCATACATAACACCTGACATCATTGAAAATGATA
ATATAATTAAATTAATGTTGTGAATAATTGAGAAACCTTTTAAAACCATTCCTTTTTTAT
--------