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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC378
Library SL
(Link to library)
Clone ID SLC378
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID SLC378Z
(Link to Original site)
Representative DNA sequence 
>SLC378 (SLC378Q) /CSM/SL/SLC3-D/SLC378Q.Seq.d/
XXXXXXXXXXGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAA
TATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCA
AATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTA
TACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCA
ACTCTTGCTCAAGCACAACAAATTATTTTTGAATTCATCCAAGCTAATGTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATGTCCAAAAAAAA
AAAAA
sequence update 1998. 5. 1
Translated Amino Acid sequence 
---FGIPNMYPNVNWTITEYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLY
IIGTSHCADMMIPTSVSPPTLAQAQQIIFEFIQANV*kkkkkkkknnknkikisnvqkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---fwyskyvskr*ldnh*iwwy*srtilc**ylickwfk**maqscnltr*ckc*kyfi
hywykslc*yddsnfsitsnscssttnyf*ihps*clkkkkkkkkk**k*n*niqcpkkk
k


Frame B:
---FGIPNMYPNVNWTITEYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLY
IIGTSHCADMMIPTSVSPPTLAQAQQIIFEFIQANV*kkkkkkkknnknkikisnvqkkk


Frame C:
---lvfqiciqtligqslnmvvliqnhplliipym*mvqmmngtilqsyqvmqmlkilyt
llvqvivli**fqlqyhlqlllkhnklflnssklmfkkkkkkkkkiikiklkypmskkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC378 (SLC378Q) /CSM/SL/SLC3-D/SLC378Q.Seq.d/                        559   e-158
SSM567 (SSM567Q) /CSM/SS/SSM5-C/SSM567Q.Seq.d/                        551   e-156
SSL659 (SSL659Q) /CSM/SS/SSL6-C/SSL659Q.Seq.d/                        551   e-156
SSK766 (SSK766Q) /CSM/SS/SSK7-C/SSK766Q.Seq.d/                        551   e-156
SSH309 (SSH309Q) /CSM/SS/SSH3-A/SSH309Q.Seq.d/                        551   e-156
SSC669 (SSC669Q) /CSM/SS/SSC6-C/SSC669Q.Seq.d/                        551   e-156
SSC637 (SSC637Q) /CSM/SS/SSC6-B/SSC637Q.Seq.d/                        551   e-156
SSB272 (SSB272Q) /CSM/SS/SSB2-C/SSB272Q.Seq.d/                        551   e-156
SSB182 (SSB182Q) /CSM/SS/SSB1-D/SSB182Q.Seq.d/                        551   e-156
SLH719 (SLH719Q) /CSM/SL/SLH7-A/SLH719Q.Seq.d/                        551   e-156
own update 2003.10.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034520) Dictyostelium discoideum slug cDNA, clone SLC378.      557   e-154  1
(AU052905) Dictyostelium discoideum slug cDNA, clone SLF296.      549   e-152  1
(AU039792) Dictyostelium discoideum slug cDNA, clone SLG435.      549   e-152  1
(AU039401) Dictyostelium discoideum slug cDNA, clone SLH719.      549   e-152  1
(AU038129) Dictyostelium discoideum slug cDNA, clone SSH309.      549   e-152  1
(AU037068) Dictyostelium discoideum slug cDNA, clone SSB272.      549   e-152  1
(AU034766) Dictyostelium discoideum slug cDNA, clone SLE301.      549   e-152  1
(AU034711) Dictyostelium discoideum slug cDNA, clone SLE223.      549   e-152  1
(AU034321) Dictyostelium discoideum slug cDNA, clone SLC680.      549   e-152  1
(AU034222) Dictyostelium discoideum slug cDNA, clone SLC278.      549   e-152  1
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...    58   9e-08
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...    51   1e-05
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...    50   2e-05
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...    49   7e-05
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...    44   0.002
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...    44   0.002
BC104722_1(BC104722|pid:none) Rattus norvegicus protease, serine...    40   0.032
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    40   0.032
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans                 38   0.093
L14331_6(L14331|pid:none) Caenorhabditis elegans cosmid K12H4, c...    38   0.093
protein update 2009. 6. 1
PSORT 

 psg: 0.81  gvh: 0.59  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SLC378 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC378Z
3' end seq. 
>SLC378Z.Seq
----------GTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAA
TATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCA
AATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTA
TACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCA
ACTCTTGCTCAAGCACAACAAATTATTTTTGAATTCATCCAAGCTAATGTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATGTCCAAAAAAAA
AAAAA
Length of 3' end seq. 355
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -