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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC370
Library SL
(Link to library)
Clone ID SLC370
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10208-1
Original site URL
Representative seq. ID SLC370P
(Link to Original site)
Representative DNA sequence 
>SLC370 (SLC370Q) /CSM/SL/SLC3-C/SLC370Q.Seq.d/
GAAAAAAAAAAAAAAAAAAAACAAAATGTTAAAACAAACAAGTATTTTGTTTACAATTTT
AATTGGATTTTTAATTTGCAATGTCAGCAATGGTATGGTTGTAAAGGAGAAAATCAATAG
TAATAATAATTTTGTATTTTTAGCAAAATTCTGTTACAGTACAACACCAGGTGCTTCATT
ATCATACGTTGGAACAGCAGCAAACGCAAGTACATCNATTTTACATTTACAACGATTGGG
CCACTGAATGGGGTGTAGGTGGTAATAGTAAATATAGTTGTTTGGAAAGAGTGACAGCAA
GTACTCCACAAACCAATATGAATCAACTTTCAGCCAACTCATCAAGAGTCTTATTACCAG
AGGATCACCAACGTGCCCATTTTTGGTATGTCGTTGCAGCAAATTGTGATAGTGAAGTTG
GTGAAGTTGATTTCACCCTCACCCTCTTAAATGGCGGTGGTTTGTGGTCAGCCCAATTCT
CTTACGATGAACAAGGTCTCGAAGCATTATATTTGGTTTACTTTTTCGTATTTTTAGTCT
TAACTGGTTACACTGCCTTTACAGCATTCAAATTATATAAAGCAXXXXXXXXXXGCAATT
TCACGTGTTACAATTGATGAAAAGAGAATTGTATTAGGTGCTATGGGTGTTTTAACAGTA
TTATATTTCATTATGTTTGTTTGGATTAAAGCAGGTGAAAATCCAGCAGCAACCACCTAT
ATGTATGATACAGTACCAGGTATTATTTTATTGGTAGCACGTAGTTTAGCAATGTTATGG
TTTATGTGGTGTGGTTATAATACATATTTAGAAGAAACTCATCCAGCCAAACGTAACTTT
TACACTGTCTTTGGTATTGCATTTGTTGCTTGGTTCTTAATCCTTCCAATTATTTGTATC
ATTGCCGCCGCAGTCGAACCATGGGTACGTGAAAAAACAGTTCTCGCTTTCTATGTCACC
ACTAATGCTCTCGCTCTCATTGGTGTTTCTTTCCTCTTATCACCATCAAGATCTGGTGAA
TATCTCGCTTCTGCAACTAAAACTTCCTCTGAAGAATACTCTTCAATTACTACTAAATCT
TATGATGAATCATTTTAAAAAAAGATTTAGTAAAATTTAA
sequence update 1999. 1.19
Translated Amino Acid sequence 
kkkkkktkc*nkqvfclqf*ldf*famsamvwl*rrksiviiilyf*QNSVTVQHQVLHY
HTLEQQQTQVHXFYIYNDWATEWGVGGNSKYSCLERVTASTPQTNMNQLSANSSRVLLPE
DHQRAHFWYVVAANCDSEVGEVDFTLTLLNGGGLWSAQFSYDEQGLEALYLVYFFVFLVL
TGYTAFTAFKLYKA---

---AISRVTIDEKRIVLGAMGVLTVLYFIMFVWIKAGENPAATTYMYDTVPGIILLVARS
LAMLWFMWCGYNTYLEETHPAKRNFYTVFGIAFVAWFLILPIICIIAAAVEPWVREKTVL
AFYVTTNALALIGVSFLLSPSRSGEYLASATKTSSEEYSSITTKSYDESF*kki**nl
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkkkkkqnvktnkyfvynfnwifnlqcqqwygckgenq****fcifskillqyntrcfi
iirwnsskrkyixftfttigplngv*vvivnivvwke*qqvlhkpi*infqpthqesyyq
ritnvpifgmslqqivivklvklispsps*mavvcgqpnsltmnkvskhyiwftfsyf*s
*lvtlplqhsnyik---

---AISRVTIDEKRIVLGAMGVLTVLYFIMFVWIKAGENPAATTYMYDTVPGIILLVARS
LAMLWFMWCGYNTYLEETHPAKRNFYTVFGIAFVAWFLILPIICIIAAAVEPWVREKTVL
AFYVTTNALALIGVSFLLSPSRSGEYLASATKTSSEEYSSITTKSYDESF*kki**nl

Frame B:
kkkkkknkmlkqtsilftiligflicnvsngmvvkekinsnnnfvflakfcysttpgasl
syvgtaanastsilhlqrlgh*mgcrw***i*lfgksdskystnqyestfsqlikslitr
gsptcpflvcrcskl***sw*s*fhphplkwrwfvvspillr*trsrsiifgllfrifsl
nwlhclysiqii*s---

---qfhvlqlmkrely*vlwvf*qyyislclfglkqvkiqqqppicmiqyqvlfyw*hvv
*qcyglcgvviihi*kkliqpnvtftlslvlhlllgs*sfqlfvslppqsnhgyvkkqfs
lsmsplmlslslvflssyhhqdlvnisllqlklplkntlqlllnlmmnhfkkrfski*

Frame C:
kkkkkktkc*nkqvfclqf*ldf*famsamvwl*rrksiviiilyf*QNSVTVQHQVLHY
HTLEQQQTQVHXFYIYNDWATEWGVGGNSKYSCLERVTASTPQTNMNQLSANSSRVLLPE
DHQRAHFWYVVAANCDSEVGEVDFTLTLLNGGGLWSAQFSYDEQGLEALYLVYFFVFLVL
TGYTAFTAFKLYKA---

---nftcyn**kencircygcfnsiifhyvcld*sr*ksssnhlyv*ystryyfigst*f
snvmvyvvwl*yifrrnsssqt*llhclwycicclvlnpsnylyhcrrsrtmgt*knssr
flchh*csrshwcffplitikiw*isrfcn*nfl*rilfnyy*il**iilkkdlvkf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC370 (SLC370Q) /CSM/SL/SLC3-C/SLC370Q.Seq.d/                       2072   0.0
SSH263 (SSH263Q) /CSM/SS/SSH2-C/SSH263Q.Seq.d/                       1001   0.0
VSH328 (VSH328Q) /CSM/VS/VSH3-B/VSH328Q.Seq.d/                        993   0.0
VFB428 (VFB428Q) /CSM/VF/VFB4-B/VFB428Q.Seq.d/                        916   0.0
VFK175 (VFK175Q) /CSM/VF/VFK1-D/VFK175Q.Seq.d/                        908   0.0
VFA333 (VFA333Q) /CSM/VF/VFA3-B/VFA333Q.Seq.d/                        890   0.0
VFF109 (VFF109Q) /CSM/VF/VFF1-A/VFF109Q.Seq.d/                        823   0.0
VFI343 (VFI343Q) /CSM/VF/VFI3-B/VFI343Q.Seq.d/                        743   0.0
VFI316 (VFI316Q) /CSM/VF/VFI3-A/VFI316Q.Seq.d/                        743   0.0
VFN802 (VFN802Q) /CSM/VF/VFN8-A/VFN802Q.Seq.d/                        739   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060956) Dictyostelium discoideum slug cDNA, clone SLC370.     1110   0.0    1
(AU038093) Dictyostelium discoideum slug cDNA, clone SSH263.      993   0.0    2
(AU034516) Dictyostelium discoideum slug cDNA, clone SLC370.      993   0.0    2
(AU267269) Dictyostelium discoideum vegetative cDNA clone:VS...   985   0.0    2
(BJ429396) Dictyostelium discoideum cDNA clone:ddv3h08, 3' e...   900   0.0    3
(BJ433415) Dictyostelium discoideum cDNA clone:ddv21e19, 3' ...   894   0.0    2
(BJ428788) Dictyostelium discoideum cDNA clone:ddv1b09, 3' e...   888   0.0    1
(BJ428169) Dictyostelium discoideum cDNA clone:ddv11a03, 3' ...   821   0.0    1
(BJ431976) Dictyostelium discoideum cDNA clone:ddv17p03, 3' ...   741   0.0    2
(BJ430954) Dictyostelium discoideum cDNA clone:ddv9j11, 3' e...   726   0.0    2
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT031347_1(BT031347|pid:none) Drosophila melanogaster RE71821 fu...    59   2e-07
CP001332_137(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    44   0.010
BC083689_1(BC083689|pid:none) Rattus norvegicus G protein-couple...    42   0.049
AB041545_1(AB041545|pid:none) Mus musculus brain cDNA, clone MNC...    41   0.064
(Q8C4U2) RecName: Full=Transmembrane protein 145;  &AK081054_1(A...    41   0.084
BC118234_1(BC118234|pid:none) Bos taurus transmembrane protein 1...    40   0.19
AX380483_1(AX380483|pid:none) Sequence 35 from Patent WO0202621.       38   0.71
(Q86V85) RecName: Full=Integral membrane protein GPR180; AltName...    36   2.1
CP001056_2973(CP001056|pid:none) Clostridium botulinum B str. Ek...    34   7.9
protein update 2009. 6. 1
PSORT 

 psg: 0.76  gvh: 0.28  alm: 0.15  top: 0.87  tms: 0.33  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLC370 is pla
5' end seq. ID SLC370F
5' end seq. 
>SLC370F.Seq
GAAAAAAAAAAAAAAAAAAAACAAAATGTTAAAACAAACAAGTATTTTGTTTACAATTTT
AATTGGATTTTTAATTTGCAATGTCAGCAATGGTATGGTTGTAAAGGAGAAAATCAATAG
TAATAATAATTTTGTATTTTTAGCAAAATTCTGTTACAGTACAACACCAGGTGCTTCATT
ATCATACGTTGGAACAGCAGCAAACGCAAGTACATCNATTTTACATTTACAACGATTGGG
CCACTGAATGGGGTGTAGGTGGTAATAGTAAATATAGTTGTTTGGAAAGAGTGACAGCAA
GTACTCCACAAACCAATATGAATCAACTTTCAGCCAACTCATCAAGAGTCTTATTACCAG
AGGATCACCAACGTGCCCATTTTTGGTATGTCGTTGCAGCAAATTGTGATAGTGAAGTTG
GTGAAGTTGATTTCACCCTCACCCTCTTAAATGGCGGTGGTTTGTGGTCAGCCCAATTCT
CTTACGATGAACAAGGTCTCGAAGCATTATATTTGGTTTACTTTTTCGTATTTTTAGTCT
TAACTGGTTACACTGCCTTTACAGCATTCAAATTATATAAAGCA----------
Length of 5' end seq. 584
3' end seq. ID SLC370Z
3' end seq. 
>SLC370Z.Seq
----------GCAATTTCACGTGTTACAATTGATGAAAAGAGAATTGTATTAGGTGCTAT
GGGTGTTTTAACAGTATTATATTTCATTATGTTTGTTTGGATTAAAGCAGGTGAAAATCC
AGCAGCAACCACCTATATGTATGATACAGTACCAGGTATTATTTTATTGGTAGCACGTAG
TTTAGCAATGTTATGGTTTATGTGGTGTGGTTATAATACATATTTAGAAGAAACTCATCC
AGCCAAACGTAACTTTTACACTGTCTTTGGTATTGCATTTGTTGCTTGGTTCTTAATCCT
TCCAATTATTTGTATCATTGCCGCCGCAGTCGAACCATGGGTACGTGAAAAAACAGTTCT
CGCTTTCTATGTCACCACTAATGCTCTCGCTCTCATTGGTGTTTCTTTCCTCTTATCACC
ATCAAGATCTGGTGAATATCTCGCTTCTGCAACTAAAACTTCCTCTGAAGAATACTCTTC
AATTACTACTAAATCTTATGATGAATCATTTTAAAAAAAGATTTAGTAAAATTTAA
Length of 3' end seq. 526
Connected seq. ID SLC370P
Connected seq. 
>SLC370P.Seq
GAAAAAAAAAAAAAAAAAAAACAAAATGTTAAAACAAACAAGTATTTTGTTTACAATTTT
AATTGGATTTTTAATTTGCAATGTCAGCAATGGTATGGTTGTAAAGGAGAAAATCAATAG
TAATAATAATTTTGTATTTTTAGCAAAATTCTGTTACAGTACAACACCAGGTGCTTCATT
ATCATACGTTGGAACAGCAGCAAACGCAAGTACATCNATTTTACATTTACAACGATTGGG
CCACTGAATGGGGTGTAGGTGGTAATAGTAAATATAGTTGTTTGGAAAGAGTGACAGCAA
GTACTCCACAAACCAATATGAATCAACTTTCAGCCAACTCATCAAGAGTCTTATTACCAG
AGGATCACCAACGTGCCCATTTTTGGTATGTCGTTGCAGCAAATTGTGATAGTGAAGTTG
GTGAAGTTGATTTCACCCTCACCCTCTTAAATGGCGGTGGTTTGTGGTCAGCCCAATTCT
CTTACGATGAACAAGGTCTCGAAGCATTATATTTGGTTTACTTTTTCGTATTTTTAGTCT
TAACTGGTTACACTGCCTTTACAGCATTCAAATTATATAAAGCA----------GCAATT
TCACGTGTTACAATTGATGAAAAGAGAATTGTATTAGGTGCTATGGGTGTTTTAACAGTA
TTATATTTCATTATGTTTGTTTGGATTAAAGCAGGTGAAAATCCAGCAGCAACCACCTAT
ATGTATGATACAGTACCAGGTATTATTTTATTGGTAGCACGTAGTTTAGCAATGTTATGG
TTTATGTGGTGTGGTTATAATACATATTTAGAAGAAACTCATCCAGCCAAACGTAACTTT
TACACTGTCTTTGGTATTGCATTTGTTGCTTGGTTCTTAATCCTTCCAATTATTTGTATC
ATTGCCGCCGCAGTCGAACCATGGGTACGTGAAAAAACAGTTCTCGCTTTCTATGTCACC
ACTAATGCTCTCGCTCTCATTGGTGTTTCTTTCCTCTTATCACCATCAAGATCTGGTGAA
TATCTCGCTTCTGCAACTAAAACTTCCTCTGAAGAATACTCTTCAATTACTACTAAATCT
TATGATGAATCATTTTAAAAAAAGATTTAGTAAAATTTAA
Length of connected seq. 1110
Full length Seq ID -
Full length Seq. -
Length of full length seq. -