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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK201
Library AF
(Link to library)
Clone ID AFK201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFK201P
(Link to Original site)
Representative DNA sequence 
>AFK201 (AFK201Q) /CSM/AF/AFK2-A/AFK201Q.Seq.d/
CACTGTTGGCCTACTGGTTTTTATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAA
TGTCATTAAATATTGAAAAAGTTAAAGAATTTAGNAATAAAGCATGGGATGAAAATATTT
TACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAAT
GGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCAC
AAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTT
TCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACA
TGGGTAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAG
NCATCAAGAATAACAAACTCTATGGNCGNGGXXXXXXXXXXTCAAATCGCAAAATGTGCT
GAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTC
ACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACC
GGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACC
GTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTA
AAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAA
TGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAA
GCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCA
TTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGT
CCAGGTTCAAATGCTCAGGTCCAAATAATTCTTAGATATTCCATTTGCCAAGAAATTATT
AAGTTGTGTATTATTATTAGAGCTCATTCCAAGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LLAYWFLFYFPIDKIKLNKMSLNIEKVKEFXNKAWDENILPTLSKYIEIPNQSPLYDAEW
ATNGYTEEAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHM
GKQPPLTDAWDEGLHPYKAXIKNNKLYGR---

---QIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNA
GNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTR
PELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAQVQIIL
RYSICQEIIKLCIIIRAHSK
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgfyfifqlikln*ikch*ilkklknlxikhgmkifyqhfqnilkfqinhhymmqn
gqpmviqkkqfny*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvt
wvnnhhslmhgmkdyihtkqxsritnsmxx---

---snrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnylhhrc*rysthfkc
w*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqng*mcfrlgfttn*
trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywfirsrfkcsgpnns
*ifhlprny*vvyyy*ssfqv

Frame B:
tvgllvfilfsn**n*ik*nviky*ks*ri*x*smg*kyftntfkiy*nsksitii*crm
gnqwlyrrsnsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwsh
g*tttth*cmg*ritsiqsxhqe*qtlwxx---

---QIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICITGAEGIPHTSNA
GNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDKCASGWDSPQTR
PELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLGPGSNAQVQIIL
RYSICQEIIKLCIIIRAHSK

Frame C:
LLAYWFLFYFPIDKIKLNKMSLNIEKVKEFXNKAWDENILPTLSKYIEIPNQSPLYDAEW
ATNGYTEEAIQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHM
GKQPPLTDAWDEGLHPYKAXIKNNKLYGR---

---ksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgiqlfaspvlkvfhtlqml
vms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklpskwinvlqvgihhkld
qn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsllvy*vqvqmlrsk*fl
dipfakkllscvlllelips
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK201 (AFK201Q) /CSM/AF/AFK2-A/AFK201Q.Seq.d/                       1828   0.0
VFB402 (VFB402Q) /CSM/VF/VFB4-A/VFB402Q.Seq.d/                       1178   0.0
CFG835 (CFG835Q) /CSM/CF/CFG8-B/CFG835Q.Seq.d/                       1164   0.0
AFB685 (AFB685Q) /CSM/AF/AFB6-D/AFB685Q.Seq.d/                       1164   0.0
AFB653 (AFB653Q) /CSM/AF/AFB6-C/AFB653Q.Seq.d/                       1164   0.0
AFB648 (AFB648Q) /CSM/AF/AFB6-B/AFB648Q.Seq.d/                       1164   0.0
VFK345 (VFK345Q) /CSM/VF/VFK3-B/VFK345Q.Seq.d/                       1156   0.0
VFK163 (VFK163Q) /CSM/VF/VFK1-C/VFK163Q.Seq.d/                       1150   0.0
VFJ593 (VFJ593Q) /CSM/VF/VFJ5-D/VFJ593Q.Seq.d/                       1150   0.0
SFL182 (SFL182Q) /CSM/SF/SFL1-D/SFL182Q.Seq.d/                       1150   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence.    48  0.23  1
BI435853|BI435853.1 EST538614 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence.    48  0.23  1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence.    48  0.23  1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence.    48  0.23  1
BI435717|BI435717.1 EST538478 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCI86 5' sequence, mRNA sequence.    48  0.23  1
BI433279|BI433279.1 EST536040 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC62 5' sequence, mRNA sequence.    48  0.23  1
BQ046631|BQ046631.1 EST595749 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI15C18 5' end, mRNA sequence.    48  0.23  1
AC137602|AC137602.12 Medicago truncatula clone mth2-14k4, complete sequence.    46  0.26  4
CC535979|CC535979.1 CH240_414D20.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_414D20, genomic survey sequence.    36  0.39  2
AL353661|AL353661.41 Human DNA sequence from clone RP3-445O1 on chromosome 6.    44  0.40  2
dna update 2003. 9. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   167   4e-40
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   166   9e-40
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   165   3e-39
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   165   3e-39
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi...   163   8e-39
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   163   8e-39
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple...   151   4e-35
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...   151   4e-35
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...   151   4e-35
BX571966_664(BX571966|pid:none) Burkholderia pseudomallei strain...   150   7e-35
protein update 2009. 4.24
PSORT 

 psg: 0.95  gvh: 0.32  alm: 0.36  top: 0.60  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for AFK201 is cyt
5' end seq. ID AFK201F
5' end seq. 
>AFK201F.Seq
CACTGTTGGCCTACTGGTTTTTATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAA
TGTCATTAAATATTGAAAAAGTTAAAGAATTTAGNAATAAAGCATGGGATGAAAATATTT
TACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAAT
GGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCAC
AAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTT
TCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACA
TGGGTAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAG
NCATCAAGAATAACAAACTCTATGGNCGNGG----------
Length of 5' end seq. 451
3' end seq. ID AFK201Z
3' end seq. 
>AFK201Z.Seq
----------TCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAAT
TCTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACA
AAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATG
CTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCAT
TCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATG
GTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTA
GACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACG
TATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATT
GTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAATGCTCAGGTCCAAATAATTC
TTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTATTATTATTAGAGCTCATTCCA
AGTT
Length of 3' end seq. 594
Connected seq. ID AFK201P
Connected seq. 
>AFK201P.Seq
CACTGTTGGCCTACTGGTTTTTATTTTATTTTCCAATTGATAAAATTAAATTAAATAAAA
TGTCATTAAATATTGAAAAAGTTAAAGAATTTAGNAATAAAGCATGGGATGAAAATATTT
TACCAACACTTTCAAAATATATTGAAATTCCAAATCAATCACCATTATATGATGCAGAAT
GGGCAACCAATGGTTATACAGAAGAAGCAATTCAATTATTAGAGAAATGGATCTTAGCAC
AAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAATTGAAGGATTAACACCAATTATTT
TCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTAAAACTGTACTTTTATATGGTCACA
TGGGTAAACAACCACCACTCACTGATGCATGGGATGAAGGATTACATCCATACAAAGCAG
NCATCAAGAATAACAAACTCTATGGNCGNGG----------TCAAATCGCAAAATGTGCT
GAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTC
ACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACC
GGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACC
GTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTA
AAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAA
TGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAA
GCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCA
TTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGT
CCAGGTTCAAATGCTCAGGTCCAAATAATTCTTAGATATTCCATTTGCCAAGAAATTATT
AAGTTGTGTATTATTATTAGAGCTCATTCCAAGTT
Length of connected seq. 1045
Full length Seq ID -
Full length Seq. -
Length of full length seq. -