SLC351
Library SL
(Link to library)
Clone ID SLC351
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC351Z
(Link to Original site)
Representative DNA sequence
>SLC351 (SLC351Q) /CSM/SL/SLC3-C/SLC351Q.Seq.d/
XXXXXXXXXXTGCTGCCTCAATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGT
CAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCA
TTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGT
GATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATG
TTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATG
AAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATC
TTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATACGACGAATCA
GGTCCATCAATTGTTCACAGAAAATGTTTCTAAATTATTTAATAAATAATAAAAAAACAA
ATTGTTGTAATAATCTAAAA
sequence update 1998. 5. 1
Translated Amino Acid sequence
---LPQSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD
VDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSIL
ASLSTFQQMWISKEEYDESGPSIVHRKCF*ii**iikkqivvii*


Translated Amino Acid sequence (All Frames)
Frame A:
---aasiisprkiiritrrsshhhr**tfplprsplptiilrygicwyprnhlqlhhem*
c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nhcstrt*ilcldwwiyl
sftlnfptnvdlqrrirrirsincsqkmflnylinnkktnccnnlk


Frame B:
---LPQSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD
VDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSIL
ASLSTFQQMWISKEEYDESGPSIVHRKCF*ii**iikkqivvii*


Frame C:
---clnhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnllvstkppttps*nvm
lisvkiytvtssypvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvntlsglvdls*
lhsqlsnkcgspkknttnqvhqlftenvsklfnk**knkll**sk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC351 (SLC351Q) /CSM/SL/SLC3-C/SLC351Q.Seq.d/ 930 0.0
SLB768 (SLB768Q) /CSM/SL/SLB7-C/SLB768Q.Seq.d/ 914 0.0
FC-AG07 (FC-AG07Q) /CSM/FC/FC-AG/FC-AG07Q.Seq.d/ 914 0.0
SLG253 (SLG253Q) /CSM/SL/SLG2-C/SLG253Q.Seq.d/ 912 0.0
SLB192 (SLB192Q) /CSM/SL/SLB1-D/SLB192Q.Seq.d/ 912 0.0
SLI633 (SLI633Q) /CSM/SL/SLI6-B/SLI633Q.Seq.d/ 908 0.0
SLG853 (SLG853Q) /CSM/SL/SLG8-C/SLG853Q.Seq.d/ 908 0.0
SLC251 (SLC251Q) /CSM/SL/SLC2-C/SLC251Q.Seq.d/ 908 0.0
SLF113 (SLF113Q) /CSM/SL/SLF1-A/SLF113Q.Seq.d/ 906 0.0
FC-BS18 (FC-BS18Q) /CSM/FC/FC-BS/FC-BS18Q.Seq.d/ 902 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034501) Dictyostelium discoideum slug cDNA, clone SLC351. 912 0.0 2
(AU034122) Dictyostelium discoideum slug cDNA, clone SLB768. 892 0.0 2
(AU284268) Dictyostelium discoideum gamete cDNA clone:FC-AG0... 892 0.0 2
(AU033582) Dictyostelium discoideum slug cDNA, clone SLB192. 892 0.0 2
(AU039717) Dictyostelium discoideum slug cDNA, clone SLG253. 892 0.0 2
(AU039964) Dictyostelium discoideum slug cDNA, clone SLG853. 892 0.0 2
(AU034201) Dictyostelium discoideum slug cDNA, clone SLC251. 892 0.0 2
(AU053429) Dictyostelium discoideum slug cDNA, clone SLI633. 892 0.0 2
(AU052794) Dictyostelium discoideum slug cDNA, clone SLF113. 892 0.0 2
(AU284978) Dictyostelium discoideum gamete cDNA clone:FC-BS0... 884 0.0 2
dna update 2009. 3. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 291 4e-78
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 291 4e-78
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 291 4e-78
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 291 4e-78
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 289 2e-77
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 287 8e-77
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 286 2e-76
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 286 2e-76
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 286 2e-76
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p... 285 3e-76
protein update 2009. 6. 1
PSORT

psg: 0.57 gvh: 0.37 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SLC351 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC351Z
3' end seq.
>SLC351Z.Seq
----------TGCTGCCTCAATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGT
CAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCA
TTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGT
GATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATG
TTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATG
AAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATC
TTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATACGACGAATCA
GGTCCATCAATTGTTCACAGAAAATGTTTCTAAATTATTTAATAAATAATAAAAAAACAA
ATTGTTGTAATAATCTAAAA
Length of 3' end seq. 490
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -