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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC349
Library SL
(Link to library)
Clone ID SLC349
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16466-1
Original site URL
Representative seq. ID SLC349P
(Link to Original site)
Representative DNA sequence 
>SLC349 (SLC349Q) /CSM/SL/SLC3-C/SLC349Q.Seq.d/
ATATTAATAAAACGAAAATGTCGACACTCTATGATGTTGTTATCGTTGGTGGTGGTTTAG
CAGGTTTAAATGCTGCCTATCAATTTAAGAAAGCTGGTTTAAATGTAATGGTATTAGAAG
CAAGAGATAGATTTGGTGGTAGAACAGAGTCAATTAAAGTTGAAGATTATTGGTTTGATT
TAGGCGGACAATGGATGGGAGGTACACATAAATATTTAAAAGAATTATGTGACGAACTTG
GAGTTAAATCATTCCCACAATATGATGAAGGTAAACATGTATTAGAGATTAATGGTAAGA
AAGTTTATTATCAAGGTAATATTAGTAATTTAAATAAGAGTTATAATTTAGAAGGATTAT
TCGAGTCAATTAGCAAGATCGATGAATTATCAGCCGAATTGAATCCAGATAAACCATATG
CACATAGTAAATCAAAGGAATATGATCAGTTAACAGTAGCACAATGGGTGGAGAAGAATG
TTAAAGGTAATGACGCAAGATCCATCATCGATTGGTTTTGTCGTGTTTGCGTTGCCGCAG
AACCAACTGAAGTTAGTTTCTTATTTTTCTTACATTTCATTCGTACAGCTGGTAACTATG
GTTTATTAGCAGATATTCATGGTGGAGCACAACAAGATCGTTTAATTGGTGGTTCACAAC
AAATCTCTGAAGGTTXXXXXXXXXXCGTGATGAACTCACTCAAAGAATGCCAATGGGTTC
CGTCATTAAAACCATCACCATCTATGATGAACCATTCTGGAGAAAAGAAGGTTATTCAGC
TGAAGCCATCTCTGATAAAGGTCCAATCTTTATCTGCTATGATGACTCTTCACATGACGA
TAAGAAAACAGCTATCGTTGGTTTCATTGCTGCTTCAGCCGCTAAAGATTGGGCTGAAAA
ATCACCAGAAGAAAGAAAGAGAGCCGTCTTAGACTGTTATGCTCGTTGGTGGGGTCCAAA
AGCATTATCTCCAAGAATCTTTTTAGAGAAAAGTTGGAAAGAAGAAGAATATTCACGTGG
TTGTTATTTAGGTTACACTAGTCCAGGTACTCTCTACCAATGTGGTGAACATTTACGTGC
TCCAGTTGGTAGAATTCATTGGGCTGGTACAGAAACTGCTTCAGTTTGGATTGGTTATAT
GGAAGGTGCCTTAGAATCAGGTTTTAGAGTTTCAAAAGAAATTAAAGATAAATTATTAAA
TTCAAAATTATAAATAAATAAATAAATAATAAAAAATCATAAAAATGTAAA
sequence update 1999. 1.19
Translated Amino Acid sequence 
INKTKMSTLYDVVIVGGGLAGLNAAYQFKKAGLNVMVLEARDRFGGRTESIKVEDYWFDL
GGQWMGGTHKYLKELCDELGVKSFPQYDEGKHVLEINGKKVYYQGNISNLNKSYNLEGLF
ESISKIDELSAELNPDKPYAHSKSKEYDQLTVAQWVEKNVKGNDARSIIDWFCRVCVAAE
PTEVSFLFFLHFIRTAGNYGLLADIHGGAQQDRLIGGSQQISEG---

---RDELTQRMPMGSVIKTITIYDEPFWRKEGYSAEAISDKGPIFICYDDSSHDDKKTAI
VGFIAASAAKDWAEKSPEERKRAVLDCYARWWGPKALSPRIFLEKSWKEEEYSRGCYLGY
TSPGTLYQCGEHLRAPVGRIHWAGTETASVWIGYMEGALESGFRVSKEIKDKLLNSKL*i
nk*iiknhknv
Translated Amino Acid sequence (All Frames) 
Frame A:
ilikrkcrhsmmllslvvv*qv*mlpinlrklv*m*wy*kqeidlvveqsqlklkiigli
*adngwevhini*knyvtnlelnhshnmmkvnmy*rlmvrkfiikvilvi*irvii*kdy
ssqlarsmnyqpn*iqinhmhivnqrnmis*q*hngwrrmlkvmtqdpssigfvvfalpq
nqlklvsyfsyisfvqlvtmvy*qifmvehnkiv*lvvhnkslkv---

---RDELTQRMPMGSVIKTITIYDEPFWRKEGYSAEAISDKGPIFICYDDSSHDDKKTAI
VGFIAASAAKDWAEKSPEERKRAVLDCYARWWGPKALSPRIFLEKSWKEEEYSRGCYLGY
TSPGTLYQCGEHLRAPVGRIHWAGTETASVWIGYMEGALESGFRVSKEIKDKLLNSKL*i
nk*iiknhknv

Frame B:
y**nenvdtl*ccyrwwwfsrfkcclsi*eswfkcngirskr*iww*nrvn*s*rllv*f
rrtmdgryt*ifkrim*rtws*iipti**r*tcird*w*esllsr*y**fk*el*frrii
rvn*qdr*iisriesr*tict**ikgi*svnsstmggeec*r**rkihhrlvlsclrcrr
tn*s*flifltfhsysw*lwfisryswwsttrsfnwwfttnl*r---

---vmnslkecqwvpslkpspsmmnhsgekkviqlkpslikvqslsammtlhmtirkqls
lvslllqplkiglknhqkkereps*tvmlvggvqkhylqesf*rkvgkkknihvvvi*vt
lvqvlstnvvniyvlqlvefiglvqkllqfglviwkvp*nqvlefqkklkiny*iqnyk*
ink**kiikm*

Frame C:
INKTKMSTLYDVVIVGGGLAGLNAAYQFKKAGLNVMVLEARDRFGGRTESIKVEDYWFDL
GGQWMGGTHKYLKELCDELGVKSFPQYDEGKHVLEINGKKVYYQGNISNLNKSYNLEGLF
ESISKIDELSAELNPDKPYAHSKSKEYDQLTVAQWVEKNVKGNDARSIIDWFCRVCVAAE
PTEVSFLFFLHFIRTAGNYGLLADIHGGAQQDRLIGGSQQISEG---

---**thsknangfrh*nhhhl**tilekrrlfs*shl**rsnlyll**lft*r*ensyr
wfhccfsr*rlg*kitrrkkesrlrllcslvgsksiisknlfreklerrriftwllfrlh
*sryslpmw*tftcssw*nslgwyrncfsldwlygrclrirf*sfkrn*r*iikfkiink
*innkks*kck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC349 (SLC349Q) /CSM/SL/SLC3-C/SLC349Q.Seq.d/                       2294   0.0
VFL280 (VFL280Q) /CSM/VF/VFL2-D/VFL280Q.Seq.d/                       1338   0.0
FC-AC12 (FC-AC12Q) /CSM/FC/FC-AC/FC-AC12Q.Seq.d/                     1292   0.0
CFC831 (CFC831Q) /CSM/CF/CFC8-B/CFC831Q.Seq.d/                       1179   0.0
CFB191 (CFB191Q) /CSM/CF/CFB1-D/CFB191Q.Seq.d/                       1179   0.0
VFN480 (VFN480Q) /CSM/VF/VFN4-D/VFN480Q.Seq.d/                       1176   0.0
CFG795 (CFG795Q) /CSM/CF/CFG7-D/CFG795Q.Seq.d/                       1174   0.0
CFI555 (CFI555Q) /CSM/CF/CFI5-C/CFI555Q.Seq.d/                       1170   0.0
CFI459 (CFI459Q) /CSM/CF/CFI4-C/CFI459Q.Seq.d/                       1170   0.0
CFH589 (CFH589Q) /CSM/CF/CFH5-D/CFH589Q.Seq.d/                       1170   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060948) Dictyostelium discoideum slug cDNA, clone SLC349.     1338   0.0    1
(C22949) Dictyostelium discoideum gamete cDNA, clone FC-AC12.    1292   0.0    1
(BJ360501) Dictyostelium discoideum cDNA clone:ddc6n08, 5' e...  1179   0.0    1
(BJ360014) Dictyostelium discoideum cDNA clone:ddc3e23, 5' e...  1179   0.0    1
(BJ415849) Dictyostelium discoideum cDNA clone:ddv23o20, 5' ...  1178   0.0    1
(BJ416971) Dictyostelium discoideum cDNA clone:ddv27p20, 5' ...  1176   0.0    1
(BJ359472) Dictyostelium discoideum cDNA clone:ddc14n23, 5' ...  1174   0.0    1
(BJ361767) Dictyostelium discoideum cDNA clone:ddc18m13, 5' ...  1170   0.0    1
(BJ361529) Dictyostelium discoideum cDNA clone:ddc17f16, 5' ...  1170   0.0    1
(BJ361323) Dictyostelium discoideum cDNA clone:ddc16a23, 5' ...  1170   0.0    1
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP006618_3091(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   172   3e-41
(Q6PLK3) RecName: Full=Amine oxidase [flavin-containing] B;     ...   154   6e-36
AY185211_1(AY185211|pid:none) Danio rerio monoamine oxidase mRNA...   154   8e-36
(Q6NSN2) RecName: Full=Amine oxidase [flavin-containing];       ...   154   8e-36
AF217955_1(AF217955|pid:none) Bos taurus monoamine oxidase B mRN...   153   1e-35
I51346(I51346) monoamine oxidase - rainbow trout  &L37878_1(L378...   151   4e-35
(P56560) RecName: Full=Amine oxidase [flavin-containing] B;     ...   151   5e-35
(Q7YRB7) RecName: Full=Amine oxidase [flavin-containing] B;     ...   150   1e-34
AB178283_1(AB178283|pid:none) Equus caballus MAOB mRNA for monoa...   148   3e-34
AB047270_1(AB047270|pid:none) Cavia porcellus MAO-A mRNA for put...   148   4e-34
protein update 2009. 6. 1
PSORT 

 psg: 0.93  gvh: 0.60  alm: 0.38  top: 0.27  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 1.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: peroxisomal
	 20.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SLC349 is cyt
5' end seq. ID SLC349F
5' end seq. 
>SLC349F.Seq
ATATTAATAAAACGAAAATGTCGACACTCTATGATGTTGTTATCGTTGGTGGTGGTTTAG
CAGGTTTAAATGCTGCCTATCAATTTAAGAAAGCTGGTTTAAATGTAATGGTATTAGAAG
CAAGAGATAGATTTGGTGGTAGAACAGAGTCAATTAAAGTTGAAGATTATTGGTTTGATT
TAGGCGGACAATGGATGGGAGGTACACATAAATATTTAAAAGAATTATGTGACGAACTTG
GAGTTAAATCATTCCCACAATATGATGAAGGTAAACATGTATTAGAGATTAATGGTAAGA
AAGTTTATTATCAAGGTAATATTAGTAATTTAAATAAGAGTTATAATTTAGAAGGATTAT
TCGAGTCAATTAGCAAGATCGATGAATTATCAGCCGAATTGAATCCAGATAAACCATATG
CACATAGTAAATCAAAGGAATATGATCAGTTAACAGTAGCACAATGGGTGGAGAAGAATG
TTAAAGGTAATGACGCAAGATCCATCATCGATTGGTTTTGTCGTGTTTGCGTTGCCGCAG
AACCAACTGAAGTTAGTTTCTTATTTTTCTTACATTTCATTCGTACAGCTGGTAACTATG
GTTTATTAGCAGATATTCATGGTGGAGCACAACAAGATCGTTTAATTGGTGGTTCACAAC
AAATCTCTGAAGGTT----------
Length of 5' end seq. 675
3' end seq. ID SLC349Z
3' end seq. 
>SLC349Z.Seq
----------CGTGATGAACTCACTCAAAGAATGCCAATGGGTTCCGTCATTAAAACCAT
CACCATCTATGATGAACCATTCTGGAGAAAAGAAGGTTATTCAGCTGAAGCCATCTCTGA
TAAAGGTCCAATCTTTATCTGCTATGATGACTCTTCACATGACGATAAGAAAACAGCTAT
CGTTGGTTTCATTGCTGCTTCAGCCGCTAAAGATTGGGCTGAAAAATCACCAGAAGAAAG
AAAGAGAGCCGTCTTAGACTGTTATGCTCGTTGGTGGGGTCCAAAAGCATTATCTCCAAG
AATCTTTTTAGAGAAAAGTTGGAAAGAAGAAGAATATTCACGTGGTTGTTATTTAGGTTA
CACTAGTCCAGGTACTCTCTACCAATGTGGTGAACATTTACGTGCTCCAGTTGGTAGAAT
TCATTGGGCTGGTACAGAAACTGCTTCAGTTTGGATTGGTTATATGGAAGGTGCCTTAGA
ATCAGGTTTTAGAGTTTCAAAAGAAATTAAAGATAAATTATTAAATTCAAAATTATAAAT
AAATAAATAAATAATAAAAAATCATAAAAATGTAAA
Length of 3' end seq. 566
Connected seq. ID SLC349P
Connected seq. 
>SLC349P.Seq
ATATTAATAAAACGAAAATGTCGACACTCTATGATGTTGTTATCGTTGGTGGTGGTTTAG
CAGGTTTAAATGCTGCCTATCAATTTAAGAAAGCTGGTTTAAATGTAATGGTATTAGAAG
CAAGAGATAGATTTGGTGGTAGAACAGAGTCAATTAAAGTTGAAGATTATTGGTTTGATT
TAGGCGGACAATGGATGGGAGGTACACATAAATATTTAAAAGAATTATGTGACGAACTTG
GAGTTAAATCATTCCCACAATATGATGAAGGTAAACATGTATTAGAGATTAATGGTAAGA
AAGTTTATTATCAAGGTAATATTAGTAATTTAAATAAGAGTTATAATTTAGAAGGATTAT
TCGAGTCAATTAGCAAGATCGATGAATTATCAGCCGAATTGAATCCAGATAAACCATATG
CACATAGTAAATCAAAGGAATATGATCAGTTAACAGTAGCACAATGGGTGGAGAAGAATG
TTAAAGGTAATGACGCAAGATCCATCATCGATTGGTTTTGTCGTGTTTGCGTTGCCGCAG
AACCAACTGAAGTTAGTTTCTTATTTTTCTTACATTTCATTCGTACAGCTGGTAACTATG
GTTTATTAGCAGATATTCATGGTGGAGCACAACAAGATCGTTTAATTGGTGGTTCACAAC
AAATCTCTGAAGGTT----------CGTGATGAACTCACTCAAAGAATGCCAATGGGTTC
CGTCATTAAAACCATCACCATCTATGATGAACCATTCTGGAGAAAAGAAGGTTATTCAGC
TGAAGCCATCTCTGATAAAGGTCCAATCTTTATCTGCTATGATGACTCTTCACATGACGA
TAAGAAAACAGCTATCGTTGGTTTCATTGCTGCTTCAGCCGCTAAAGATTGGGCTGAAAA
ATCACCAGAAGAAAGAAAGAGAGCCGTCTTAGACTGTTATGCTCGTTGGTGGGGTCCAAA
AGCATTATCTCCAAGAATCTTTTTAGAGAAAAGTTGGAAAGAAGAAGAATATTCACGTGG
TTGTTATTTAGGTTACACTAGTCCAGGTACTCTCTACCAATGTGGTGAACATTTACGTGC
TCCAGTTGGTAGAATTCATTGGGCTGGTACAGAAACTGCTTCAGTTTGGATTGGTTATAT
GGAAGGTGCCTTAGAATCAGGTTTTAGAGTTTCAAAAGAAATTAAAGATAAATTATTAAA
TTCAAAATTATAAATAAATAAATAAATAATAAAAAATCATAAAAATGTAAA
Length of connected seq. 1241
Full length Seq ID -
Full length Seq. -
Length of full length seq. -