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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC345
Library SL
(Link to library)
Clone ID SLC345
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14962-1
Original site URL
Representative seq. ID SLC345P
(Link to Original site)
Representative DNA sequence 
>SLC345 (SLC345Q) /CSM/SL/SLC3-B/SLC345Q.Seq.d/
CACAAAATTTTTTTTTAAAAAAACAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTA
GAGTTGGTCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAA
AAACTTCATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATAC
CAATGGCAGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAAC
CAATGAGACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATC
TTGAAAAGAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGG
TTGATGCAAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTGCAGCAGAGGAAT
CAATTCGTCAATATGGTGAGCAGATTCCATTGGATATTTCATCACGTAATTTGGGTTTCC
AAGGTATAACTAAAAGATTCCCAGTTGGTCCAATCTCTATGATTGCACCATTCAATTTCC
CTTTGAATTTATGTGCTCACAAGATTGCACCATCGATTGCTGCTGGTTGTCCATTCGTTT
TGAAACCATCAGATCGTACACCAATCAGTGCAATGTTGTTGGGTGAACTATTGGCAAAAC
AAACACCACTCCTTCCAGAGGGTGCTTTCTCAATATXXXXXXXXXXAAGTTGTATCTCTG
TTCAAAGAGTTTTCATTCATGATTCACTCTATGATCAAATGAAACAACTATTGATTGATG
GTGCTAAACCATTAATTCAACGTATGGGTGATCCAATGGATCCAACCACTTTTGTTGGTC
CAATGATCACTGAACATGATGCTAAACGTGTCGAATCTTGGGTTAATAATGCTGTCTCCA
AAGGTGCAAATGTTTTAGTTGGTGGTAAACGTAATGATCATTTCATGCAACCAACAATCT
TGGAGAATTTACCATTGGATACTGAAATCTCTTGTAAAGAAGTATTTGGTCCTGTATTCT
TTATTGAAAGATTCAATGATTTCAAACAAGTTGTTCAACGTGTAAACTCTTCAGAATTTG
GTTTACAAGCTGGTGTCTTTACTGATGATATTCATAAAGCCTACTACGCCTTTAACAATA
TAGAAGCTGGTGCTGTCGTTATCAATGATATCCCTTCAGTTCGTGTTGATGCTCAACCAT
ACGGTGGTGTTAAAGAATCTGGTTTCGGTCGTGAAGGTATCAGACATACAATCGAAGAAT
ATACTGAATTAAAATTAATGATTTTAAAAGATATTGGTAAAATTTAAAATAAATATAATT
GTAT
sequence update 1999. 1.19
Translated Amino Acid sequence 
qnfflkkqkkik*KMNKFVRVGQYVKSNYPLYLGSKPITKTSSSLEVIDKFTNEIASKIP
MADKEMIEQSIVIAQKACEPMRQLSAATKKQILLNIANDLEKRADEFAKAIVVEVGKPLV
DANAEVGRAIDTFTCAAEESIRQYGEQIPLDISSRNLGFQGITKRFPVGPISMIAPFNFP
LNLCAHKIAPSIAAGCPFVLKPSDRTPISAMLLGELLAKQTPLLPEGAFSI---

---SCISVQRVFIHDSLYDQMKQLLIDGAKPLIQRMGDPMDPTTFVGPMITEHDAKRVES
WVNNAVSKGANVLVGGKRNDHFMQPTILENLPLDTEISCKEVFGPVFFIERFNDFKQVVQ
RVNSSEFGLQAGVFTDDIHKAYYAFNNIEAGAVVINDIPSVRVDAQPYGGVKESGFGREG
IRHTIEEYTELKLMILKDIGKI*nkync
Translated Amino Acid sequence (All Frames) 
Frame A:
hkiff*knkkklnrk*inllelvnmlnqiihfi*vvnqlqklhqv*kllinlpmklqvky
qwqikk*lnnqlllhrkhvnq*dnyqqqprnkff*illmilkreqmnllkq*llklvnhw
lmqmqklveqsihlhvqqrnqfvnmvsrfhwifhhviwvskv*lkdsqlvqsl*lhhsis
l*iyvltrlhhrlllvvhsf*nhqivhqsvqccwvnywqnkhhsfqrvlsqy---

---klylcsksfhs*ftl*snettid*wc*tinstyg*sngsnhfcwsndh*t*c*tcri
lg**cclqrckcfsww*t**sfhatnnlgeftigy*nll*rsiwscily*kiq*fqtscs
tcklfriwftswcly**ys*sllrl*qyrswccryq*ypfssc*cstirwc*riwfrs*r
yqtynrriy*ikindfkryw*nlk*i*ly

Frame B:
tkfffkktkkn*iene*ic*swsic*iklstlfr**tnyknfikfrsy**iyq*nck*nt
ngr*rnd*tincyctesm*tnetiissnqetnsfkyc**s*kesr*ic*snsc*sw*tig
*ckcrsw*snryiymcsrginssiw*adsigyfit*fgfpryn*kipswsnlydctiqfp
fefmcsqdctidccwlsirfetirsytnqcnvvg*tigktnttpsrgcfln---

---SCISVQRVFIHDSLYDQMKQLLIDGAKPLIQRMGDPMDPTTFVGPMITEHDAKRVES
WVNNAVSKGANVLVGGKRNDHFMQPTILENLPLDTEISCKEVFGPVFFIERFNDFKQVVQ
RVNSSEFGLQAGVFTDDIHKAYYAFNNIEAGAVVINDIPSVRVDAQPYGGVKESGFGREG
IRHTIEEYTELKLMILKDIGKI*nkync

Frame C:
qnfflkkqkkik*KMNKFVRVGQYVKSNYPLYLGSKPITKTSSSLEVIDKFTNEIASKIP
MADKEMIEQSIVIAQKACEPMRQLSAATKKQILLNIANDLEKRADEFAKAIVVEVGKPLV
DANAEVGRAIDTFTCAAEESIRQYGEQIPLDISSRNLGFQGITKRFPVGPISMIAPFNFP
LNLCAHKIAPSIAAGCPFVLKPSDRTPISAMLLGELLAKQTPLLPEGAFSI---

---vvslfkefsfmihsmik*nny*lmvlnh*fnvwviqwiqplllvq*slnmmlnvsnl
glimlspkvqmf*lvvnvmiiscnqqswriyhwilkslvkkylvlysllkdsmisnklfn
v*tlqnlvyklvsllmifikpttplti*klvlslsmislqfvlmlnhtvvlknlvsvvkv
sdiqskniln*n**f*kilvkfkiniiv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC345 (SLC345Q) /CSM/SL/SLC3-B/SLC345Q.Seq.d/                       2500   0.0
AFF643 (AFF643Q) /CSM/AF/AFF6-B/AFF643Q.Seq.d/                       1227   0.0
SLE735 (SLE735Q) /CSM/SL/SLE7-B/SLE735Q.Seq.d/                       1225   0.0
AFD634 (AFD634Q) /CSM/AF/AFD6-B/AFD634Q.Seq.d/                       1187   0.0
SFD769 (SFD769Q) /CSM/SF/SFD7-C/SFD769Q.Seq.d/                       1154   0.0
SFC363 (SFC363Q) /CSM/SF/SFC3-C/SFC363Q.Seq.d/                       1154   0.0
AFN616 (AFN616Q) /CSM/AF/AFN6-A/AFN616Q.Seq.d/                       1154   0.0
AFF163 (AFF163Q) /CSM/AF/AFF1-C/AFF163Q.Seq.d/                       1154   0.0
AFD457 (AFD457Q) /CSM/AF/AFD4-C/AFD457Q.Seq.d/                       1154   0.0
AFO285 (AFO285Q) /CSM/AF/AFO2-D/AFO285Q.Seq.d/                       1150   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060947) Dictyostelium discoideum slug cDNA, clone SLC345.     1314   0.0    1
(BJ323801) Dictyostelium discoideum cDNA clone:dda12e12, 5' ...  1227   0.0    1
(BJ324828) Dictyostelium discoideum cDNA clone:dda8c10, 5' e...  1187   0.0    1
(BJ416208) Dictyostelium discoideum cDNA clone:ddv25f12, 5' ...  1132   0.0    1
(BJ359699) Dictyostelium discoideum cDNA clone:ddc2c04, 5' e...  1128   0.0    1
(BJ328446) Dictyostelium discoideum cDNA clone:dda28o04, 5' ...  1128   0.0    1
(BJ388246) Dictyostelium discoideum cDNA clone:dds8j17, 5' e...  1126   0.0    1
(BJ327262) Dictyostelium discoideum cDNA clone:dda19e23, 5' ...  1120   0.0    1
(BJ325332) Dictyostelium discoideum cDNA clone:dda13k22, 5' ...  1096   0.0    1
(AU039551) Dictyostelium discoideum slug cDNA, clone SLE735.     1092   0.0    1
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001130_539(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...   255   3e-66
CP001080_1040(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...   243   1e-62
CP001230_1553(CP001230|pid:none) Persephonella marina EX-H1, com...   228   4e-58
CP001052_1211(CP001052|pid:none) Burkholderia phytofirmans PsJN ...   212   3e-53
CP000270_1148(CP000270|pid:none) Burkholderia xenovorans LB400 c...   209   1e-52
CP000011_204(CP000011|pid:none) Burkholderia mallei ATCC 23344 c...   208   4e-52
CP000152_2305(CP000152|pid:none) Burkholderia sp. 383 chromosome...   208   4e-52
CP000388_3816(CP000388|pid:none) Pseudoalteromonas atlantica T6c...   208   4e-52
BX571966_1913(BX571966|pid:none) Burkholderia pseudomallei strai...   208   4e-52
CP000959_551(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c...   207   9e-52
protein update 2009. 6. 1
PSORT 

 psg: 0.63  gvh: 0.33  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SLC345 is cyt
5' end seq. ID SLC345F
5' end seq. 
>SLC345F.Seq
CACAAAATTTTTTTTTAAAAAAACAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTA
GAGTTGGTCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAA
AAACTTCATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATAC
CAATGGCAGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAAC
CAATGAGACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATC
TTGAAAAGAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGG
TTGATGCAAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTGCAGCAGAGGAAT
CAATTCGTCAATATGGTGAGCAGATTCCATTGGATATTTCATCACGTAATTTGGGTTTCC
AAGGTATAACTAAAAGATTCCCAGTTGGTCCAATCTCTATGATTGCACCATTCAATTTCC
CTTTGAATTTATGTGCTCACAAGATTGCACCATCGATTGCTGCTGGTTGTCCATTCGTTT
TGAAACCATCAGATCGTACACCAATCAGTGCAATGTTGTTGGGTGAACTATTGGCAAAAC
AAACACCACTCCTTCCAGAGGGTGCTTTCTCAATAT----------
Length of 5' end seq. 696
3' end seq. ID SLC345Z
3' end seq. 
>SLC345Z.Seq
----------AAGTTGTATCTCTGTTCAAAGAGTTTTCATTCATGATTCACTCTATGATC
AAATGAAACAACTATTGATTGATGGTGCTAAACCATTAATTCAACGTATGGGTGATCCAA
TGGATCCAACCACTTTTGTTGGTCCAATGATCACTGAACATGATGCTAAACGTGTCGAAT
CTTGGGTTAATAATGCTGTCTCCAAAGGTGCAAATGTTTTAGTTGGTGGTAAACGTAATG
ATCATTTCATGCAACCAACAATCTTGGAGAATTTACCATTGGATACTGAAATCTCTTGTA
AAGAAGTATTTGGTCCTGTATTCTTTATTGAAAGATTCAATGATTTCAAACAAGTTGTTC
AACGTGTAAACTCTTCAGAATTTGGTTTACAAGCTGGTGTCTTTACTGATGATATTCATA
AAGCCTACTACGCCTTTAACAATATAGAAGCTGGTGCTGTCGTTATCAATGATATCCCTT
CAGTTCGTGTTGATGCTCAACCATACGGTGGTGTTAAAGAATCTGGTTTCGGTCGTGAAG
GTATCAGACATACAATCGAAGAATATACTGAATTAAAATTAATGATTTTAAAAGATATTG
GTAAAATTTAAAATAAATATAATTGTAT
Length of 3' end seq. 618
Connected seq. ID SLC345P
Connected seq. 
>SLC345P.Seq
CACAAAATTTTTTTTTAAAAAAACAAAAAAAAATTAAATAGAAAATGAATAAATTTGTTA
GAGTTGGTCAATATGTTAAATCAAATTATCCACTTTATTTAGGTAGTAAACCAATTACAA
AAACTTCATCAAGTTTAGAAGTTATTGATAAATTTACCAATGAAATTGCAAGTAAAATAC
CAATGGCAGATAAAGAAATGATTGAACAATCAATTGTTATTGCACAGAAAGCATGTGAAC
CAATGAGACAATTATCAGCAGCAACCAAGAAACAAATTCTTTTAAATATTGCTAATGATC
TTGAAAAGAGAGCAGATGAATTTGCTAAAGCAATAGTTGTTGAAGTTGGTAAACCATTGG
TTGATGCAAATGCAGAAGTTGGTAGAGCAATCGATACATTTACATGTGCAGCAGAGGAAT
CAATTCGTCAATATGGTGAGCAGATTCCATTGGATATTTCATCACGTAATTTGGGTTTCC
AAGGTATAACTAAAAGATTCCCAGTTGGTCCAATCTCTATGATTGCACCATTCAATTTCC
CTTTGAATTTATGTGCTCACAAGATTGCACCATCGATTGCTGCTGGTTGTCCATTCGTTT
TGAAACCATCAGATCGTACACCAATCAGTGCAATGTTGTTGGGTGAACTATTGGCAAAAC
AAACACCACTCCTTCCAGAGGGTGCTTTCTCAATAT----------AAGTTGTATCTCTG
TTCAAAGAGTTTTCATTCATGATTCACTCTATGATCAAATGAAACAACTATTGATTGATG
GTGCTAAACCATTAATTCAACGTATGGGTGATCCAATGGATCCAACCACTTTTGTTGGTC
CAATGATCACTGAACATGATGCTAAACGTGTCGAATCTTGGGTTAATAATGCTGTCTCCA
AAGGTGCAAATGTTTTAGTTGGTGGTAAACGTAATGATCATTTCATGCAACCAACAATCT
TGGAGAATTTACCATTGGATACTGAAATCTCTTGTAAAGAAGTATTTGGTCCTGTATTCT
TTATTGAAAGATTCAATGATTTCAAACAAGTTGTTCAACGTGTAAACTCTTCAGAATTTG
GTTTACAAGCTGGTGTCTTTACTGATGATATTCATAAAGCCTACTACGCCTTTAACAATA
TAGAAGCTGGTGCTGTCGTTATCAATGATATCCCTTCAGTTCGTGTTGATGCTCAACCAT
ACGGTGGTGTTAAAGAATCTGGTTTCGGTCGTGAAGGTATCAGACATACAATCGAAGAAT
ATACTGAATTAAAATTAATGATTTTAAAAGATATTGGTAAAATTTAAAATAAATATAATT
GTAT
Length of connected seq. 1314
Full length Seq ID -
Full length Seq. -
Length of full length seq. -