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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC318
Library SL
(Link to library)
Clone ID SLC318
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC318Z
(Link to Original site)
Representative DNA sequence 
>SLC318 (SLC318Q) /CSM/SL/SLC3-A/SLC318Q.Seq.d/
XXXXXXXXXXAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGC
CTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGG
TAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATC
AGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAA
AGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGA
TCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGC
TCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAAC
TTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCA
CAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATTATAA
sequence update 1998. 4.30
Translated Amino Acid sequence 
---LAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESA
GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP
PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnlny
Translated Amino Acid sequence (All Frames) 
Frame A:
---n*ptspstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnq
lvstkppttps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*klksll
hqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlinmlyfi*t*ii


Frame B:
---islrrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygis
wyprnhlqlhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhen*nhcs
trt*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn**iccilfklkl*


Frame C:
---LAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESA
GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP
PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnlny
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH781 (SLH781Q) /CSM/SL/SLH7-D/SLH781Q.Seq.d/                       1051   0.0
SLH645 (SLH645Q) /CSM/SL/SLH6-B/SLH645Q.Seq.d/                       1051   0.0
SLE208 (SLE208Q) /CSM/SL/SLE2-A/SLE208Q.Seq.d/                       1051   0.0
SLC708 (SLC708Q) /CSM/SL/SLC7-A/SLC708Q.Seq.d/                       1051   0.0
SLC318 (SLC318Q) /CSM/SL/SLC3-A/SLC318Q.Seq.d/                       1051   0.0
SLE353 (SLE353Q) /CSM/SL/SLE3-C/SLE353Q.Seq.d/                       1045   0.0
SLB729 (SLB729Q) /CSM/SL/SLB7-B/SLB729Q.Seq.d/                       1045   0.0
SLB707 (SLB707Q) /CSM/SL/SLB7-A/SLB707Q.Seq.d/                       1045   0.0
VFN693 (VFN693Q) /CSM/VF/VFN6-D/VFN693Q.Seq.d/                       1043   0.0
SLE450 (SLE450Q) /CSM/SL/SLE4-C/SLE450Q.Seq.d/                       1043   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039434) Dictyostelium discoideum slug cDNA, clone SLH781.     1051   0.0    1
(AU039363) Dictyostelium discoideum slug cDNA, clone SLH645.     1051   0.0    1
(AU034701) Dictyostelium discoideum slug cDNA, clone SLE208.     1051   0.0    1
(AU034336) Dictyostelium discoideum slug cDNA, clone SLC708.     1051   0.0    1
(AU034245) Dictyostelium discoideum slug cDNA, clone SLC318.     1051   0.0    1
(AU034928) Dictyostelium discoideum slug cDNA, clone SLE353.     1045   0.0    1
(AU034089) Dictyostelium discoideum slug cDNA, clone SLB729.     1045   0.0    1
(AU033993) Dictyostelium discoideum slug cDNA, clone SLB707.     1045   0.0    1
(AU034988) Dictyostelium discoideum slug cDNA, clone SLE450.     1043   0.0    1
(BJ435897) Dictyostelium discoideum cDNA clone:ddv28i24, 3' ...  1043   0.0    1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   324   7e-88
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   324   7e-88
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        324   7e-88
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   320   1e-86
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   320   1e-86
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   320   1e-86
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          317   9e-86
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   317   1e-85
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   316   2e-85
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   315   6e-85
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLC318 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC318Z
3' end seq. 
>SLC318Z.Seq
----------AAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGC
CTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGG
TAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATC
AGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAA
AGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGA
TCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGC
TCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAAC
TTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCA
CAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATTATAA
Length of 3' end seq. 530
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -