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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC304
Library SL
(Link to library)
Clone ID SLC304
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15154-1
Original site URL
Representative seq. ID SLC304Z
(Link to Original site)
Representative DNA sequence 
>SLC304 (SLC304Q) /CSM/SL/SLC3-A/SLC304Q.Seq.d/
XXXXXXXXXXCCGTTTCACCAGACTCTGCTGTTCACTTGGGTAAACACGCCGCTGAAAAT
GATAAACCATTCCTCTACGGTTTAGCCGCTCCATTCTTAATTGATTTCTTCTTTGATAAA
GTTTCTGAACTCCTCCCATACGTTGATATCGTTTTTGCCAATGAAAGTGAAGCCGCCACT
CTTGGTCGTAAAATGAACTGGGGTGAAGATTTAACCGTCATCGCTGAAAAATTAGCCGCT
TGGGAAAAAGTTAACACCAAACGTACTCGTACCGTCGTTTTCACCCAAGGTCCAGATGCC
ACTCTTGTCTTCCAAAATGGTGTTTTAACAAAATACAACCCAATCAAAGTTGCCACTGAA
GATATCCTCGATTTAAACGCTGCTGGTGATTCATTCTGTGGTGGTTTCCTTGCCGCTTAC
TCCAATGGTCAAGAAATCGCCAAATGTGTCGAAGCTGGTCACTATGCCTCTTGGGAAATT
ATTAGACAAAATGGTGCCACCGTCCCAGCCAGTGAACCAAAAATCCAATTCTAAAATAAA
TTTTATTAAAATATATAATT
sequence update 1998. 4.30
Translated Amino Acid sequence 
---VSPDSAVHLGKHAAENDKPFLYGLAAPFLIDFFFDKVSELLPYVDIVFANESEAATL
GRKMNWGEDLTVIAEKLAAWEKVNTKRTRTVVFTQGPDATLVFQNGVLTKYNPIKVATED
ILDLNAAGDSFCGGFLAAYSNGQEIAKCVEAGHYASWEIIRQNGATVPASEPKIQF*nkf
y*ni*
Translated Amino Acid sequence (All Frames) 
Frame A:
---rftrlccslg*trr*k**tiplrfsrsiln*fll**sf*tppir*yrfcq*k*srhs
ws*nelg*rfnrhr*kisrlgks*hqtysyrrfhprsrchsclpkwcfnkiqpnqsch*r
yprfkrcw*filwwfpcrllqwsrnrqmcrswslcllgny*tkwchrpsq*tknpilk*i
llkyii


Frame B:
---VSPDSAVHLGKHAAENDKPFLYGLAAPFLIDFFFDKVSELLPYVDIVFANESEAATL
GRKMNWGEDLTVIAEKLAAWEKVNTKRTRTVVFTQGPDATLVFQNGVLTKYNPIKVATED
ILDLNAAGDSFCGGFLAAYSNGQEIAKCVEAGHYASWEIIRQNGATVPASEPKIQF*nkf
y*ni*


Frame C:
---fhqtllftwvntplkminhsstv*plhs*lisslikflnsshtlisflpmkvkppll
vvk*tgvki*psslkn*plgkkltpnvlvpsfspkvqmpllsskmvf*qnttqsklplki
ssi*tllvihsvvvslpltpmvkkspnvsklvtmplgklldkmvppsqpvnqksnskinf
ikiyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC327 (VSC327Q) /CSM/VS/VSC3-B/VSC327Q.Seq.d/                       1090   0.0
SLC304 (SLC304Q) /CSM/SL/SLC3-A/SLC304Q.Seq.d/                       1090   0.0
SLC124 (SLC124Q) /CSM/SL/SLC1-A/SLC124Q.Seq.d/                       1084   0.0
VSE490 (VSE490Q) /CSM/VS/VSE4-D/VSE490Q.Seq.d/                       1076   0.0
VFH755 (VFH755Q) /CSM/VF/VFH7-C/VFH755Q.Seq.d/                       1065   0.0
VFE801 (VFE801Q) /CSM/VF/VFE8-A/VFE801Q.Seq.d/                       1065   0.0
VFD787 (VFD787Q) /CSM/VF/VFD7-D/VFD787Q.Seq.d/                       1065   0.0
VFN258 (VFN258Q) /CSM/VF/VFN2-C/VFN258Q.Seq.d/                       1059   0.0
VFK730 (VFK730Q) /CSM/VF/VFK7-B/VFK730Q.Seq.d/                       1059   0.0
VFB633 (VFB633Q) /CSM/VF/VFB6-B/VFB633Q.Seq.d/                       1059   0.0
own update 2003.10.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262483) Dictyostelium discoideum vegetative cDNA clone:VS...  1090   0.0    1
(AU034235) Dictyostelium discoideum slug cDNA, clone SLC304.     1090   0.0    1
(AU034164) Dictyostelium discoideum slug cDNA, clone SLC124.     1084   0.0    1
(AU263145) Dictyostelium discoideum vegetative cDNA clone:VS...  1043   0.0    2
(C24400) Dictyostelium discoideum gamete cDNA, clone FC-AU23.    1057   0.0    1
(BJ430822) Dictyostelium discoideum cDNA clone:ddv8n21, 3' e...   995   0.0    2
(BJ434371) Dictyostelium discoideum cDNA clone:ddv16n13, 3' ...   997   0.0    2
(BJ427903) Dictyostelium discoideum cDNA clone:ddv10b02, 3' ...   995   0.0    2
(BJ429617) Dictyostelium discoideum cDNA clone:ddv4a10, 3' e...   995   0.0    2
(BJ435561) Dictyostelium discoideum cDNA clone:ddv27c16, 3' ...   995   0.0    2
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P78825) RecName: Full=Adenosine kinase;          EC=2.7.1.20;  ...   151   1e-35
D89173_1(D89173|pid:none) Schizosaccharomyces pombe mRNA, partia...   151   1e-35
(O49923) RecName: Full=Adenosine kinase;          Short=AK;     ...   150   3e-35
BT043709_1(BT043709|pid:none) Salmo salar clone HM5_2665 adenosi...   149   6e-35
BC081712_1(BC081712|pid:none) Rattus norvegicus adenosine kinase...   148   8e-35
(Q64640) RecName: Full=Adenosine kinase;          Short=AK;     ...   148   8e-35
(P55264) RecName: Full=Adenosine kinase;          Short=AK;     ...   147   2e-34
U57042_1(U57042|pid:none) Rattus norvegicus adenosine kinase mRN...   146   3e-34
JC7368(JC7368)adenosine kinase (EC 2.7.1.20) - Chinese hamster        144   2e-33
AY540997_1(AY540997|pid:none) Mus musculus adenosine kinase shor...   143   3e-33
protein update 2009. 6. 1
PSORT 

 psg: 0.43  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLC304 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC304Z
3' end seq. 
>SLC304Z.Seq
----------CCGTTTCACCAGACTCTGCTGTTCACTTGGGTAAACACGCCGCTGAAAAT
GATAAACCATTCCTCTACGGTTTAGCCGCTCCATTCTTAATTGATTTCTTCTTTGATAAA
GTTTCTGAACTCCTCCCATACGTTGATATCGTTTTTGCCAATGAAAGTGAAGCCGCCACT
CTTGGTCGTAAAATGAACTGGGGTGAAGATTTAACCGTCATCGCTGAAAAATTAGCCGCT
TGGGAAAAAGTTAACACCAAACGTACTCGTACCGTCGTTTTCACCCAAGGTCCAGATGCC
ACTCTTGTCTTCCAAAATGGTGTTTTAACAAAATACAACCCAATCAAAGTTGCCACTGAA
GATATCCTCGATTTAAACGCTGCTGGTGATTCATTCTGTGGTGGTTTCCTTGCCGCTTAC
TCCAATGGTCAAGAAATCGCCAAATGTGTCGAAGCTGGTCACTATGCCTCTTGGGAAATT
ATTAGACAAAATGGTGCCACCGTCCCAGCCAGTGAACCAAAAATCCAATTCTAAAATAAA
TTTTATTAAAATATATAATT
Length of 3' end seq. 550
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -