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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC296
Library SL
(Link to library)
Clone ID SLC296
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SLC296E
(Link to Original site)
Representative DNA sequence 
>SLC296 (SLC296Q) /CSM/SL/SLC2-D/SLC296Q.Seq.d/
AACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGA
AATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAA
ATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAA
GAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAAGATTTCA
ATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAAGATGAAG
GTCAATCATTCCATCATTAAAATTAAAAAAAAAAAATAAAAAAAAAAGCATCAATAATTA
ATAATTAATCCAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
HGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQR
VLIRHGFSHDMAMLLIEDFNRSIEYFDKHPMVQSISKDEGQSFHH*n*kkkikkkasiin
n*s
Translated Amino Acid sequence (All Frames) 
Frame A:
ntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqtyqil*fk
ey*ldmvsvmiwqcs*lkisivvlniliniqwfkvfqkmkvnhsiikikkkk*kkkhq*l
iinp


Frame B:
tryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystkltrycssk
sin*twfqs*ygnaln*rfqs*y*if**tsngskyfkr*rsiipslklkkknkkksinn*
*liq


Frame C:
HGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQR
VLIRHGFSHDMAMLLIEDFNRSIEYFDKHPMVQSISKDEGQSFHH*n*kkkikkkasiin
n*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM516 (SSM516Q) /CSM/SS/SSM5-A/SSM516Q.Seq.d/                        642   0.0
SSK136 (SSK136Q) /CSM/SS/SSK1-B/SSK136Q.Seq.d/                        642   0.0
SSH330 (SSH330Q) /CSM/SS/SSH3-B/SSH330Q.Seq.d/                        642   0.0
SSF805 (SSF805Q) /CSM/SS/SSF8-A/SSF805Q.Seq.d/                        642   0.0
SSF452 (SSF452Q) /CSM/SS/SSF4-C/SSF452Q.Seq.d/                        642   0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/                        642   0.0
SSC841 (SSC841Q) /CSM/SS/SSC8-B/SSC841Q.Seq.d/                        642   0.0
SLK494 (SLK494Q) /CSM/SL/SLK4-D/SLK494Q.Seq.d/                        642   0.0
SLI449 (SLI449Q) /CSM/SL/SLI4-C/SLI449Q.Seq.d/                        642   0.0
SLI443 (SLI443Q) /CSM/SL/SLI4-B/SLI443Q.Seq.d/                        642   0.0
own update 2003.10.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84710) Dictyostelium discoideum slug cDNA, clone SSE705.        642   0.0    2
(AU051981) Dictyostelium discoideum slug cDNA, clone SSC841.      642   0.0    2
(AU034232) Dictyostelium discoideum slug cDNA, clone SLC296.      642   0.0    2
(C92664) Dictyostelium discoideum slug cDNA, clone SSF805.        642   0.0    2
(AU038147) Dictyostelium discoideum slug cDNA, clone SSH330.      642   0.0    2
(C93278) Dictyostelium discoideum slug cDNA, clone SSM516.        642   0.0    2
(C91372) Dictyostelium discoideum slug cDNA, clone SSK136.        642   0.0    2
(C94080) Dictyostelium discoideum slug cDNA, clone SSG382.        636   0.0    2
(AU039255) Dictyostelium discoideum slug cDNA, clone SLH288.      642   0.0    2
(AU054046) Dictyostelium discoideum slug cDNA, clone SLK494.      642   e-180  1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   123   2e-27
FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   121   7e-27
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   117   2e-25
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   115   4e-25
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   115   4e-25
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   114   8e-25
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   111   7e-24
AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ...   108   8e-23
CP000272_522(CP000272|pid:none) Burkholderia xenovorans LB400 ch...   107   2e-22
CP000270_634(CP000270|pid:none) Burkholderia xenovorans LB400 ch...   104   8e-22
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SLC296 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC296E
Full length Seq. 
>SLC296E.Seq
AACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGA
AATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAA
ATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAA
GAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAAGATTTCA
ATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAAGATGAAG
GTCAATCATTCCATCATTAAAATTAAAAAAAAAAAATAAAAAAAAAAGCATCAATAATTA
ATAATTAATCCAA
Length of full length seq. 373