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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC293
Library SL
(Link to library)
Clone ID SLC293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08154-1
Original site URL
Representative seq. ID SLC293F
(Link to Original site)
Representative DNA sequence 
>SLC293 (SLC293Q) /CSM/SL/SLC2-D/SLC293Q.Seq.d/
GTAGTTTGGTAGATTGTTATACTCCAAAATGTAAAAAGGGTTACTATTTGAAAAAACCAG
AAGGTCAATGTTGTCAAATTTGTCAAAGAGAATGCAGTGCAATTCAATGTGGAATTCCAA
AATGTGCACCAGGATATATTTCACAAGTACCAGTTGGTGAATGTTGTCCAACATGTGTAA
AGAAACCAGTTAATCCTTGTGCATTAGTACTTTGTCCAATTGTTGATTGTATGATTGGAT
GGGTCCCTTATAAACCAGAGGGTGAATGTTGCACAAAATGTAAACAAGATTGTACCACTG
TAAAATGTGCAATGCCAGTATGTGAAGATGGTGCAACCCCAACAAAGAACCCAAATGAGT
GTTGCTACAAATGTCCACCAGTAAATTGTGCAGCTGTTCAATGTCTTGTTCCAAAATGTA
ATGCCAACGAGTCACTTTACACTCCACCAGAGAGATGTTGTCCAATTTGTAGACCAAACC
CAACATTAGATTGCACAAATACTTTATGTCCAATAGTAGATTGTATGATTGGATGGGTAC
CTTATAAACCAGAAGGTGAATGTTGTGATAGATGTAAACAAGACTGCACCCTTGTAAAAT
GTGCCATGCCAGTATGTGAAGATGGTTCCAAACCAATCAAAAACCCAAATGAATGTTGCT
ACAAXXXXXXXXXX
sequence update 1999. 1.11
Translated Amino Acid sequence 
SLVDCYTPKCKKGYYLKKPEGQCCQICQRECSAIQCGIPKCAPGYISQVPVGECCPTCVK
KPVNPCALVLCPIVDCMIGWVPYKPEGECCTKCKQDCTTVKCAMPVCEDGATPTKNPNEC
CYKCPPVNCAAVQCLVPKCNANESLYTPPERCCPICRPNPTLDCTNTLCPIVDCMIGWVP
YKPEGECCDRCKQDCTLVKCAMPVCEDGSKPIKNPNECCY---
Translated Amino Acid sequence (All Frames) 
Frame A:
vvw*ivilqnvkrvti*knqkvnvvkfvkenavqfnvefqnvhqdifhkyqlvnvvqhv*
rnqlilvh*yfvqlliv*ldgslinqrvnvaqnvnkivpl*nvqcqyvkmvqpqqrtqms
vatnvhq*ivqlfnvlfqnvmptshftlhqrdvvqfvdqtqh*iaqilyvq**iv*ldgy
linqkvnvvidvnktapl*nvpcqyvkmvpnqsktqmnvat---


Frame B:
*fgrllyskm*kgllfektrrsmlsnlskrmqcnsmwnskmctriyftstsw*mlsnmck
ets*slcistlsnc*lydwmgpl*trg*mlhkm*trlyhckmcnasm*rwcnpnkepk*v
llqmstsklcscsmscskm*cqrvtlhstremlsnl*tkpnirlhkyfmsnsrlydwmgt
l*trr*ml**m*trlhpckmchasm*rwfqtnqkpk*mll---


Frame C:
SLVDCYTPKCKKGYYLKKPEGQCCQICQRECSAIQCGIPKCAPGYISQVPVGECCPTCVK
KPVNPCALVLCPIVDCMIGWVPYKPEGECCTKCKQDCTTVKCAMPVCEDGATPTKNPNEC
CYKCPPVNCAAVQCLVPKCNANESLYTPPERCCPICRPNPTLDCTNTLCPIVDCMIGWVP
YKPEGECCDRCKQDCTLVKCAMPVCEDGSKPIKNPNECCY---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC293 (SLC293Q) /CSM/SL/SLC2-D/SLC293Q.Seq.d/                       1316   0.0
CFK149 (CFK149Q) /CSM/CF/CFK1-C/CFK149Q.Seq.d/                       1267   0.0
SFL176 (SFL176Q) /CSM/SF/SFL1-D/SFL176Q.Seq.d/                       1166   0.0
SLH579 (SLH579Q) /CSM/SL/SLH5-D/SLH579Q.Seq.d/                        954   0.0
SLE577 (SLE577Q) /CSM/SL/SLE5-D/SLE577Q.Seq.d/                        801   0.0
SLE816 (SLE816Q) /CSM/SL/SLE8-A/SLE816Q.Seq.d/                        761   0.0
SLA301 (SLA301Q) /CSM/SL/SLA3-A/SLA301Q.Seq.d/                        660   0.0
SLH234 (SLH234Q) /CSM/SL/SLH2-B/SLH234Q.Seq.d/                        603   e-171
CFJ385 (CFJ385Q) /CSM/CF/CFJ3-D/CFJ385Q.Seq.d/                        504   e-141
AFH814 (AFH814Q) /CSM/AF/AFH8-A/AFH814Q.Seq.d/                        365   e-100
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060933) Dictyostelium discoideum slug cDNA, clone SLC293.     1316   0.0    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...  1191   0.0    1
(BJ390817) Dictyostelium discoideum cDNA clone:dds23g19, 5' ...  1162   0.0    1
(BJ362363) Dictyostelium discoideum cDNA clone:ddc21a13, 5' ...   823   0.0    3
(AU062101) Dictyostelium discoideum slug cDNA, clone SLH579.      954   0.0    1
(AU061534) Dictyostelium discoideum slug cDNA, clone SLE577.      664   0.0    2
(AU039598) Dictyostelium discoideum slug cDNA, clone SLE816.      694   0.0    2
(BJ376173) Dictyostelium discoideum cDNA clone:ddc21a13, 3' ...   668   0.0    1
(AU060096) Dictyostelium discoideum slug cDNA, clone SLA301.      660   0.0    1
(AU062020) Dictyostelium discoideum slug cDNA, clone SLH234.      603   e-168  1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115592_21(AC115592|pid:none) Dictyostelium discoideum chromoso...   103   4e-21
BX571800_1(BX571800|pid:none) Zebrafish DNA sequence from clone ...    88   2e-16
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En...    84   5e-15
(Q9JLL0) RecName: Full=Cysteine-rich motor neuron 1 protein;    ...    76   8e-13
AF168680_1(AF168680|pid:none) Mus musculus cysteine-rich repeat-...    76   8e-13
AC007378_1(AC007378|pid:none) Homo sapiens BAC clone RP11-78I14 ...    72   1e-11
AF168681_1(AF168681|pid:none) Homo sapiens CRIM1 protein gene, p...    72   1e-11
AB384861_1(AB384861|pid:none) Synthetic construct DNA, clone: pF...    72   1e-11
AX058612_1(AX058612|pid:none) Sequence 19 from Patent WO0075321....    72   1e-11
(Q9NZV1) RecName: Full=Cysteine-rich motor neuron 1 protein;    ...    72   1e-11
protein update 2009. 6. 1
PSORT 

 psg: 0.50  gvh: 0.38  alm: 0.30  top: 0.33  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLC293 is cyt
5' end seq. ID SLC293F
5' end seq. 
>SLC293F.Seq
GTAGTTTGGTAGATTGTTATACTCCAAAATGTAAAAAGGGTTACTATTTGAAAAAACCAG
AAGGTCAATGTTGTCAAATTTGTCAAAGAGAATGCAGTGCAATTCAATGTGGAATTCCAA
AATGTGCACCAGGATATATTTCACAAGTACCAGTTGGTGAATGTTGTCCAACATGTGTAA
AGAAACCAGTTAATCCTTGTGCATTAGTACTTTGTCCAATTGTTGATTGTATGATTGGAT
GGGTCCCTTATAAACCAGAGGGTGAATGTTGCACAAAATGTAAACAAGATTGTACCACTG
TAAAATGTGCAATGCCAGTATGTGAAGATGGTGCAACCCCAACAAAGAACCCAAATGAGT
GTTGCTACAAATGTCCACCAGTAAATTGTGCAGCTGTTCAATGTCTTGTTCCAAAATGTA
ATGCCAACGAGTCACTTTACACTCCACCAGAGAGATGTTGTCCAATTTGTAGACCAAACC
CAACATTAGATTGCACAAATACTTTATGTCCAATAGTAGATTGTATGATTGGATGGGTAC
CTTATAAACCAGAAGGTGAATGTTGTGATAGATGTAAACAAGACTGCACCCTTGTAAAAT
GTGCCATGCCAGTATGTGAAGATGGTTCCAAACCAATCAAAAACCCAAATGAATGTTGCT
ACAA----------
Length of 5' end seq. 664
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -