NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC278
Library SL
(Link to library)
Clone ID SLC278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID SLC278E
(Link to Original site)
Representative DNA sequence 
>SLC278 (SLC278Q) /CSM/SL/SLC2-D/SLC278Q.Seq.d/
ATTCAACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACA
ATCACTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTA
AATGGTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAA
AATACTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTA
TCACCTCCAACTCTTGCTCAAGCACAACAAATTATTTTTGAATTCATCCAAGCTAATATT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATGTC
CAAAAAAAAAAAAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
IQQCADSFGIPNMYPNVNWTITEYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAK
NTLYIIGTSHCADMMIPTSVSPPTLAQAQQIIFEFIQANI*kkkkkkkknnknkikisnv
qkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IQQCADSFGIPNMYPNVNWTITEYGGINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAK
NTLYIIGTSHCADMMIPTSVSPPTLAQAQQIIFEFIQANI*kkkkkkkknnknkikisnv
qkkk


Frame B:
fnnvpivlvfqiciqtligqslnmvvliqnhplliipym*mvqmmngtilqsyqvmqmlk
ilytllvqvivli**fqlqyhlqlllkhnklflnssklifkkkkkkkkkiikiklkypms
kkkk


Frame C:
stmcr*fwyskyvskr*ldnh*iwwy*srtilc**ylickwfk**maqscnltr*ckc*k
yfihywykslc*yddsnfsitsnscssttnyf*ihps*ylkkkkkkkkk**k*n*niqcp
kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM567 (SSM567Q) /CSM/SS/SSM5-C/SSM567Q.Seq.d/                        597   e-170
SSL659 (SSL659Q) /CSM/SS/SSL6-C/SSL659Q.Seq.d/                        597   e-170
SSK766 (SSK766Q) /CSM/SS/SSK7-C/SSK766Q.Seq.d/                        597   e-170
SSH309 (SSH309Q) /CSM/SS/SSH3-A/SSH309Q.Seq.d/                        597   e-170
SSC669 (SSC669Q) /CSM/SS/SSC6-C/SSC669Q.Seq.d/                        597   e-170
SSC637 (SSC637Q) /CSM/SS/SSC6-B/SSC637Q.Seq.d/                        597   e-170
SSB272 (SSB272Q) /CSM/SS/SSB2-C/SSB272Q.Seq.d/                        597   e-170
SSB182 (SSB182Q) /CSM/SS/SSB1-D/SSB182Q.Seq.d/                        597   e-170
SLH719 (SLH719Q) /CSM/SL/SLH7-A/SLH719Q.Seq.d/                        597   e-170
SLG435 (SLG435Q) /CSM/SL/SLG4-B/SLG435Q.Seq.d/                        597   e-170
own update 2003.10.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052905) Dictyostelium discoideum slug cDNA, clone SLF296.      597   e-166  1
(AU039792) Dictyostelium discoideum slug cDNA, clone SLG435.      597   e-166  1
(AU039401) Dictyostelium discoideum slug cDNA, clone SLH719.      597   e-166  1
(AU038129) Dictyostelium discoideum slug cDNA, clone SSH309.      597   e-166  1
(AU037068) Dictyostelium discoideum slug cDNA, clone SSB272.      597   e-166  1
(AU034766) Dictyostelium discoideum slug cDNA, clone SLE301.      597   e-166  1
(AU034711) Dictyostelium discoideum slug cDNA, clone SLE223.      597   e-166  1
(AU034321) Dictyostelium discoideum slug cDNA, clone SLC680.      597   e-166  1
(AU034222) Dictyostelium discoideum slug cDNA, clone SLC278.      597   e-166  1
(AU034047) Dictyostelium discoideum slug cDNA, clone SLB848.      597   e-166  1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...    61   1e-08
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...    55   8e-07
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...    52   6e-06
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...    52   8e-06
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...    45   0.001
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...    45   0.001
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...    44   0.002
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    42   0.009
FJ168548_4(FJ168548|pid:none) Bodo saltans clone fosmid 14L17, c...    42   0.009
BC104722_1(BC104722|pid:none) Rattus norvegicus protease, serine...    41   0.015
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SLC278 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC278E
Full length Seq. 
>SLC278E.Seq
ATTCAACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACA
ATCACTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTA
AATGGTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAA
AATACTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTA
TCACCTCCAACTCTTGCTCAAGCACAACAAATTATTTTTGAATTCATCCAAGCTAATATT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAATAAAATTAAAATATCCAATGTC
CAAAAAAAAAAAAA
Length of full length seq. 374