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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC274
Library SL
(Link to library)
Clone ID SLC274
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13979-1
Original site URL
Representative seq. ID SLC274Z
(Link to Original site)
Representative DNA sequence 
>SLC274 (SLC274Q) /CSM/SL/SLC2-D/SLC274Q.Seq.d/
XXXXXXXXXXCATTATTAATCCAAATCAAGACTTTGGTACCATCCTCTAATGAAGTTCAA
ATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTGAAAAAGTTGTCACTGATAAA
ACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAGTTTTAGTCGATGATGAAGTA
GTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTCCAGTTATCAAATCAGTTGAG
CTAATAGCTGGCGATGATGACAATAATGATATGGTCACTCCAAATGGTGATGATATTTTA
CCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAATTAATTGGTAAATCAGAATCT
TCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTTTTAAATAAAATAAAATAAAA
AAACAAATAAAATAAACAAAAAAAGTTTGTAAAGGAAAAAAAAAAATAAATGCAATTATG
AATATTTTTAAAAATTA
sequence update 1998. 4.25
Translated Amino Acid sequence 
---LLIQIKTLVPSSNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREVLVDDEVV
SKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKLIGKSESS
KPLIIN*nyliffk*nkikkqik*tkkvckgkkkinaimnifkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---iinpnqdfgtil**ssnvgyrffnsresn*ksch**nhysi*prnrft*sfsr**ss
fqssqlnlwcgsssyqis*answr**q**yghskw**yfttnf*h*nllf*kinw*irif
ktinyklklfnff*ik*nkktnkinkksl*rkkknkcnyeyf*kl


Frame B:
---LLIQIKTLVPSSNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREVLVDDEVV
SKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKLIGKSESS
KPLIIN*nyliffk*nkikkqik*tkkvckgkkkinaimnifkn


Frame C:
---y*sksrlwyhplmkfkcwisfl*fkrk*lkklslikpllhltskpiyvkf*smmk*f
pkftt*slvwvfqlsnqls**lammtimiwslqmvmifyhqlltlkpiilkn*lvnqnlq
nh*l*ikii*fflnkik*knk*nkqkkfvkekkk*mql*iflki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM439 (SSM439Q) /CSM/SS/SSM4-B/SSM439Q.Seq.d/                        761   0.0
SSM121 (SSM121Q) /CSM/SS/SSM1-A/SSM121Q.Seq.d/                        761   0.0
SSJ417 (SSJ417Q) /CSM/SS/SSJ4-A/SSJ417Q.Seq.d/                        761   0.0
SSH587 (SSH587Q) /CSM/SS/SSH5-D/SSH587Q.Seq.d/                        761   0.0
SSG432 (SSG432Q) /CSM/SS/SSG4-B/SSG432Q.Seq.d/                        761   0.0
SSG167 (SSG167Q) /CSM/SS/SSG1-C/SSG167Q.Seq.d/                        761   0.0
SLF452 (SLF452Q) /CSM/SL/SLF4-C/SLF452Q.Seq.d/                        761   0.0
SLC307 (SLC307Q) /CSM/SL/SLC3-A/SLC307Q.Seq.d/                        761   0.0
SLC274 (SLC274Q) /CSM/SL/SLC2-D/SLC274Q.Seq.d/                        761   0.0
SLB601 (SLB601Q) /CSM/SL/SLB6-A/SLB601Q.Seq.d/                        761   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034219) Dictyostelium discoideum slug cDNA, clone SLC274.      642   0.0    2
(AU037813) Dictyostelium discoideum slug cDNA, clone SSE327.      634   0.0    2
(AU052987) Dictyostelium discoideum slug cDNA, clone SLF452.      642   e-180  1
(AU039141) Dictyostelium discoideum slug cDNA, clone SSM439.      642   e-180  1
(AU038903) Dictyostelium discoideum slug cDNA, clone SSM121.      642   e-180  1
(AU038342) Dictyostelium discoideum slug cDNA, clone SSH587.      642   e-180  1
(AU034237) Dictyostelium discoideum slug cDNA, clone SLC307.      642   e-180  1
(AU033908) Dictyostelium discoideum slug cDNA, clone SLB601.      642   e-180  1
(C94120) Dictyostelium discoideum slug cDNA, clone SSG432.        642   e-180  1
(C92722) Dictyostelium discoideum slug cDNA, clone SSF130.        642   e-180  1
dna update 2009. 2.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 556,745,016
protein update 2009. 6. 1
PSORT 

 psg: 0.70  gvh: 0.37  alm: 0.31  top: 0.37  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLC274 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC274Z
3' end seq. 
>SLC274Z.Seq
----------CATTATTAATCCAAATCAAGACTTTGGTACCATCCTCTAATGAAGTTCAA
ATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTGAAAAAGTTGTCACTGATAAA
ACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAGTTTTAGTCGATGATGAAGTA
GTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTCCAGTTATCAAATCAGTTGAG
CTAATAGCTGGCGATGATGACAATAATGATATGGTCACTCCAAATGGTGATGATATTTTA
CCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAATTAATTGGTAAATCAGAATCT
TCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTTTTAAATAAAATAAAATAAAA
AAACAAATAAAATAAACAAAAAAAGTTTGTAAAGGAAAAAAAAAAATAAATGCAATTATG
AATATTTTTAAAAATTA
Length of 3' end seq. 487
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -