SLC270
Library SL
(Link to library)
Clone ID SLC270
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLC270Z
(Link to Original site)
Representative DNA sequence
>SLC270 (SLC270Q) /CSM/SL/SLC2-C/SLC270Q.Seq.d/
XXXXXXXXXXCATTTTCGTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACT
TTGCCGTCATGAAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCG
ATGTCGCTTGGTTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTT
ACACCCTTGCCAACGGTGTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAG
GTTGTGGTACTGGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAG
CTCAAATCGCCCTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAA
AGATTTTAGATGAAGAAGTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTA
CCCTCACTGAAAAACAATCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTG
ATCACTACAGATATTAAAATCTTTTGTTTAATAAATATATAAAACTTTTTTAAC
sequence update 1998. 4.25
Translated Amino Acid sequence
---IFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRY
TLANGVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPK
ILDEEVARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*


Translated Amino Acid sequence (All Frames)
Frame A:
---IFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRY
TLANGVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPK
ILDEEVARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*


Frame B:
---fsspppvvvissevntlps*kkmpsfvtlvtlivksmslg*tptpkkipsnhkltvt
plptvstsss*lkvvssi*vvvlvihlllcqtlsvtkl*lkspsglklknth*vstsyqr
f*mkkllvyi*in*vln*lpslknnpniyqfqslvhtklittdikifclini*nffn


Frame C:
---frhhhrls*yrqr*tlcrherrchrl*hwsl*l*nrcrlvkrqrqkryrqtts*plh
pcqrcphhpls*rssrqfrlwywssifcyvklfl*pnfssnrpld*n*ripircplltkd
fr*rscsftfrsirc*inyph*ktirifisssrwsiqs*slqilksfv**iyktfl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/ 1039 0.0
SLI876 (SLI876Q) /CSM/SL/SLI8-D/SLI876Q.Seq.d/ 1039 0.0
SLI320 (SLI320Q) /CSM/SL/SLI3-A/SLI320Q.Seq.d/ 1039 0.0
SLI165 (SLI165Q) /CSM/SL/SLI1-C/SLI165Q.Seq.d/ 1039 0.0
SLH831 (SLH831Q) /CSM/SL/SLH8-B/SLH831Q.Seq.d/ 1039 0.0
SLH617 (SLH617Q) /CSM/SL/SLH6-A/SLH617Q.Seq.d/ 1039 0.0
SLH447 (SLH447Q) /CSM/SL/SLH4-B/SLH447Q.Seq.d/ 1039 0.0
SLG713 (SLG713Q) /CSM/SL/SLG7-A/SLG713Q.Seq.d/ 1039 0.0
SLG240 (SLG240Q) /CSM/SL/SLG2-B/SLG240Q.Seq.d/ 1039 0.0
SLG194 (SLG194Q) /CSM/SL/SLG1-D/SLG194Q.Seq.d/ 1039 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1... 1039 0.0 1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS... 1039 0.0 1
(AU053544) Dictyostelium discoideum slug cDNA, clone SLI876. 1039 0.0 1
(AU053288) Dictyostelium discoideum slug cDNA, clone SLI320. 1039 0.0 1
(AU053219) Dictyostelium discoideum slug cDNA, clone SLI165. 1039 0.0 1
(AU052844) Dictyostelium discoideum slug cDNA, clone SLF201. 1039 0.0 1
(AU052503) Dictyostelium discoideum slug cDNA, clone SLD430. 1039 0.0 1
(AU052246) Dictyostelium discoideum slug cDNA, clone SLA418. 1039 0.0 1
(AU052210) Dictyostelium discoideum slug cDNA, clone SLA247. 1039 0.0 1
(AU052207) Dictyostelium discoideum slug cDNA, clone SLA240. 1039 0.0 1
dna update 2009. 2.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim... 332 3e-90
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden... 313 2e-84
(O13639) RecName: Full=Adenosylhomocysteinase; Short=Ad... 259 4e-68
(P27604) RecName: Full=Adenosylhomocysteinase; Short=Ad... 253 2e-66
AY278950_1(AY278950|pid:none) Branchiostoma belcheri tsingtaunes... 250 1e-65
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-... 246 2e-64
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo... 246 2e-64
(Q27580) RecName: Full=Adenosylhomocysteinase; Short=Ad... 244 7e-64
DQ440384_1(DQ440384|pid:none) Aedes aegypti clone AET-5159 S-ade... 244 7e-64
(O76757) RecName: Full=Adenosylhomocysteinase; Short=Ad... 244 9e-64
protein update 2009. 6. 1
PSORT

psg: 0.64 gvh: 0.37 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLC270 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC270Z
3' end seq.
>SLC270Z.Seq
----------CATTTTCGTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACT
TTGCCGTCATGAAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCG
ATGTCGCTTGGTTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTT
ACACCCTTGCCAACGGTGTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAG
GTTGTGGTACTGGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAG
CTCAAATCGCCCTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAA
AGATTTTAGATGAAGAAGTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTA
CCCTCACTGAAAAACAATCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTG
ATCACTACAGATATTAAAATCTTTTGTTTAATAAATATATAAAACTTTTTTAAC
Length of 3' end seq. 524
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -