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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC266
Library SL
(Link to library)
Clone ID SLC266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15469-1
Original site URL
Representative seq. ID SLC266Z
(Link to Original site)
Representative DNA sequence 
>SLC266 (SLC266Q) /CSM/SL/SLC2-C/SLC266Q.Seq.d/
XXXXXXXXXXAAATGGTAAATGCGAGTACAAATCTGAAAACTCTGGTGCTACCCTTTCTT
CATACAAAACTGTTACTGCTGGTTCAGAATCTTCATTAGAATCTGCTGTCAATGTTAACC
CAGTTTCAGTTGCAATTGATGCCAGTCACCAAAGTTTCCAACTCTATACTTCTGGTATTT
ACTATGAACCAGAATGTTCAAGTGAAAACTTGGATCATGGTGTTTTAGCTGTTGGTTATG
GTTCAGGTTCAGGTTCATCATCTGGTCAATCATCTGGTCAATCATCTGGTAATTTAAGTG
CCAGCAGTTCAAATGAATATTGGATCGTTAAAAACTCATGGGGTACATCATGGGGTATCG
AAGGTTACATTTTAATGAGCAGAAATAGAGATAATAACTGTGGTATTGCCAGTTCTGCAA
GTTTCCCAGTAGTATAAATCAAATTAACAATTTAGATCATATATATTTTATAATTTTTAT
AAAAAAAGAATAATAAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
---NGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIY
YEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIE
GYILMSRNRDNNCGIASSASFPVV*iklti*iiyil*fl*kknnk
Translated Amino Acid sequence (All Frames) 
Frame A:
---NGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIY
YEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIE
GYILMSRNRDNNCGIASSASFPVV*iklti*iiyil*fl*kknnk


Frame B:
---mvnastnlktlvlpflhtkllllvqnlh*nllsmltqfqlqlmpvtkvsnsillvft
mnqnvqvktwimvf*llvmvqvqvhhlvnhlvnhlvi*vpavqmnigslkthgvhhgvsk
vtf**aeieiitvvlpvlqvsq*yksn*qfrsyifynfykkrii


Frame C:
---w*mrvqi*klwcypffiqncycwfrifiriccqc*psfscn*cqspkfptlyfwyll
*trmfk*klgswcfscwlwfrfrfiiwsiiwsiiw*fkcqqfk*ildr*klmgyimgyrr
lhfneqk*r**lwycqfckfpssinqinnldhiyfiifikke**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH662 (VFH662Q) /CSM/VF/VFH6-C/VFH662Q.Seq.d/                        932   0.0
VFB739 (VFB739Q) /CSM/VF/VFB7-B/VFB739Q.Seq.d/                        932   0.0
SSH545 (SSH545Q) /CSM/SS/SSH5-B/SSH545Q.Seq.d/                        932   0.0
SLC266 (SLC266Q) /CSM/SL/SLC2-C/SLC266Q.Seq.d/                        932   0.0
VFL316 (VFL316Q) /CSM/VF/VFL3-A/VFL316Q.Seq.d/                        918   0.0
VFK781 (VFK781Q) /CSM/VF/VFK7-D/VFK781Q.Seq.d/                        902   0.0
VFE261 (VFE261Q) /CSM/VF/VFE2-C/VFE261Q.Seq.d/                        902   0.0
SFH338 (SFH338Q) /CSM/SF/SFH3-B/SFH338Q.Seq.d/                        902   0.0
VFI620 (VFI620Q) /CSM/VF/VFI6-A/VFI620Q.Seq.d/                        898   0.0
VFH522 (VFH522Q) /CSM/VF/VFH5-A/VFH522Q.Seq.d/                        898   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(L36205) Dictyostelium discoideum cysteine proteinase CP5 mR...   932   0.0    1
(AU038309) Dictyostelium discoideum slug cDNA, clone SSH545.      932   0.0    1
(AU034214) Dictyostelium discoideum slug cDNA, clone SLC266.      932   0.0    1
(BJ434358) Dictyostelium discoideum cDNA clone:ddv16k16, 3' ...   932   0.0    1
(BJ433877) Dictyostelium discoideum cDNA clone:ddv23p03, 3' ...   932   0.0    1
(BJ429656) Dictyostelium discoideum cDNA clone:ddv4n09, 3' e...   932   0.0    1
(BJ431023) Dictyostelium discoideum cDNA clone:ddv9i16, 3' e...   902   0.0    1
(BJ400918) Dictyostelium discoideum cDNA clone:dds15l09, 3' ...   902   0.0    1
(BJ434186) Dictyostelium discoideum cDNA clone:ddv16k05, 3' ...   898   0.0    1
(BJ432230) Dictyostelium discoideum cDNA clone:ddv18g06, 3' ...   898   0.0    1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   214   9e-55
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   214   9e-55
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   142   5e-33
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   140   2e-32
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   137   2e-31
AY277910_1(AY277910|pid:none) Branchiostoma belcheri tsingtaunes...   135   4e-31
(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   133   3e-30
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   133   3e-30
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   132   6e-30
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...   132   6e-30
protein update 2009. 6. 1
PSORT 

 psg: 0.83  gvh: 0.43  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLC266 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC266Z
3' end seq. 
>SLC266Z.Seq
----------AAATGGTAAATGCGAGTACAAATCTGAAAACTCTGGTGCTACCCTTTCTT
CATACAAAACTGTTACTGCTGGTTCAGAATCTTCATTAGAATCTGCTGTCAATGTTAACC
CAGTTTCAGTTGCAATTGATGCCAGTCACCAAAGTTTCCAACTCTATACTTCTGGTATTT
ACTATGAACCAGAATGTTCAAGTGAAAACTTGGATCATGGTGTTTTAGCTGTTGGTTATG
GTTCAGGTTCAGGTTCATCATCTGGTCAATCATCTGGTCAATCATCTGGTAATTTAAGTG
CCAGCAGTTCAAATGAATATTGGATCGTTAAAAACTCATGGGGTACATCATGGGGTATCG
AAGGTTACATTTTAATGAGCAGAAATAGAGATAATAACTGTGGTATTGCCAGTTCTGCAA
GTTTCCCAGTAGTATAAATCAAATTAACAATTTAGATCATATATATTTTATAATTTTTAT
AAAAAAAGAATAATAAA
Length of 3' end seq. 487
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -