NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC261
Library SL
(Link to library)
Clone ID SLC261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLC261Z
(Link to Original site)
Representative DNA sequence 
>SLC261 (SLC261Q) /CSM/SL/SLC2-C/SLC261Q.Seq.d/
XXXXXXXXXXTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATG
GTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTA
TCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTT
ATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTA
TCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGAC
CAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAG
GTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTT
ATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGT
AACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATA
AAATAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
---NITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGY
GVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKG
YILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*lyk
i
Translated Amino Acid sequence (All Frames) 
Frame A:
---NITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGY
GVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKG
YILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*lyk
i


Frame B:
---tllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvm
vfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kv
tf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikikiiisncik
*


Frame C:
---hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlw
csr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrl
hfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*k**fliv*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        973   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        973   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        973   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        973   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        973   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        973   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        973   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                        973   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                        973   0.0
SSH511 (SSH511Q) /CSM/SS/SSH5-A/SSH511Q.Seq.d/                        973   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   973   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.      973   0.0    1
(AU051994) Dictyostelium discoideum slug cDNA, clone SSB127.      973   0.0    1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.      973   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.      973   0.0    1
(AU039554) Dictyostelium discoideum slug cDNA, clone SLE742.      973   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.      973   0.0    1
(AU039170) Dictyostelium discoideum slug cDNA, clone SSM471.      973   0.0    1
(AU038279) Dictyostelium discoideum slug cDNA, clone SSH511.      973   0.0    1
(AU038259) Dictyostelium discoideum slug cDNA, clone SSH484.      973   0.0    1
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   273   2e-72
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   146   3e-34
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   146   3e-34
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   133   3e-30
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...   130   2e-29
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...   130   2e-29
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   130   2e-29
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...   130   2e-29
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...   130   2e-29
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...   130   2e-29
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLC261 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC261Z
3' end seq. 
>SLC261Z.Seq
----------TAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATG
GTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTA
TCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTT
ATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTA
TCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGAC
CAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAG
GTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTT
ATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGT
AACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATA
AAATAA
Length of 3' end seq. 536
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -