NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC256
Library SL
(Link to library)
Clone ID SLC256
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11921-1
Original site URL
Representative seq. ID SLC256P
(Link to Original site)
Representative DNA sequence 
>SLC256 (SLC256Q) /CSM/SL/SLC2-C/SLC256Q.Seq.d/
AAAAAAAAAAATGATTTATAATCAAGCTTTAATTGAAATTACAAAACAAGGTGCGGTGGC
TGTAGAAGAGATTAAATTTTCTCCACCAAAGTTACAAACATTAATAAGTTCAATTCAAAA
TGGAGGTTCACCAATTATAAATAAAAATGGTAGTCCAGCTGCAAATGCTTTAAAAAATAA
ACAAATTTTACAATTACAAGGTCAACAACAACAGCAACAACAACAACAACAAAATCATTC
ACAACAACAACACAATAACCAATCGAGTGTTTATTCTTTAAATTCTTTAAATCCTTATTA
TGTACAACAAGTTCTTTGTCAACTTCAAAAACCACATAATTTTATAAAACAAGTTCATGT
TGTAGTTAAAAACACACCATTTGGTATTTCAATGAAATCAAACGATCCACAATTCAATTT
TCATAATTATGTTATTAAAGCTACACTTCTCTATGATTGTGATCCACCAAAAATGGTAGA
TTTTATTCATAATGAACCATTACAATATGTTGCAACCGTTAGTGAAGATGGTACTGAAGT
TGTTGTTGATGTAAAGGTTGGTATTCTTTCATCACAACATCAAGGCTCAATGTTTCTTGC
AGTTTTACATATAAGTCATACAAGTGTACCATCCCCATCACCTAATGAACCAATTATGAC
CATCTTGAATAATATAGGTGGTAATTCAATAGCAAATTTAAATTCCCAATTACCAAATCC
AATCTATAATCTTTGTGTXXXXXXXXXXTTAATAGAGTTGTCGAAGCATTTAAATACGTA
CCAGAATCTGAAAGAAAAGATATTATTCCGAAAATGGTTGAACAATTACGTTCTGATGAT
TTAGAGCAATTGGTTGCTACATTTATGGATGAACTTGGTGTTGGTGATGCAAATAGTGAT
GTATCATCAACAAAAGGAGGTAACAATAATAATAACAATAGTATTGGTTGCTTCTGTGAG
AATTGTCCATCCAAGAAAGAATTAGAAAGGTTTCAAGGTTTATGTATGAACTTTTTCGTT
CCTCAATCAACTTTAAATCCAATGAATAATCAACAACTTTTATATTCTTCATTATTTTCA
TCATCAAATGATAACAATACGCAAAGTCAAATGAATAATTCAATCTCTGTAAATAATCAT
CACCATCATCATCACCATCAACCAAATAATTCAAATCTAACAAATGATTTATTACAATTA
CCAATAGTTTAATATTACATCCCTTATAACAATACATTTGTATTAATATTTATTTATAAA
AATTGAAATTAAAAATAAAATAAAATAAAAAATTATTATTTTA
sequence update 1999. 1.11
Translated Amino Acid sequence 
KKKMIYNQALIEITKQGAVAVEEIKFSPPKLQTLISSIQNGGSPIINKNGSPAANALKNK
QILQLQGQQQQQQQQQQNHSQQQHNNQSSVYSLNSLNPYYVQQVLCQLQKPHNFIKQVHV
VVKNTPFGISMKSNDPQFNFHNYVIKATLLYDCDPPKMVDFIHNEPLQYVATVSEDGTEV
VVDVKVGILSSQHQGSMFLAVLHISHTSVPSPSPNEPIMTILNNIGGNSIANLNSQLPNP
IYNLC---

---NRVVEAFKYVPESERKDIIPKMVEQLRSDDLEQLVATFMDELGVGDANSDVSSTKGG
NNNNNNSIGCFCENCPSKKELERFQGLCMNFFVPQSTLNPMNNQQLLYSSLFSSSNDNNT
QSQMNNSISVNNHHHHHHHQPNNSNLTNDLLQLPIV*yyipynntfvlifiykn*n*k*n
kiknyyf
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkndl*ssfn*nyktrcggcrrd*ifstkvtninkfnskwrftnyk*kw*ssckcfkk*
tnftitrstttatttttksfttttq*pieclffkffksllcttsslstsktt*fyktssc
cs*khtiwyfneikrstiqfs*lcy*sytsl*l*stkngrfys**titiccnr**rwy*s
cc*ckgwysfittsrlnvscsftyksykctipit**tnydhle*yrw*fnskfkfpitks
nl*slc---

---lielskhlntyqnlkekilfrkwlnnyvlmi*snwllhlwmnlvlvmqivmyhqqke
vtiiitivlvasvrivhprkn*kgfkvyv*tfsflnql*iq*iinnfyilhyfhhqmiti
rkvk*iiqsl*iiitiiitinqiiqi*qmiyynyq*fnitslitihly*ylfikieiknk
ik*kiiil

Frame B:
KKKMIYNQALIEITKQGAVAVEEIKFSPPKLQTLISSIQNGGSPIINKNGSPAANALKNK
QILQLQGQQQQQQQQQQNHSQQQHNNQSSVYSLNSLNPYYVQQVLCQLQKPHNFIKQVHV
VVKNTPFGISMKSNDPQFNFHNYVIKATLLYDCDPPKMVDFIHNEPLQYVATVSEDGTEV
VVDVKVGILSSQHQGSMFLAVLHISHTSVPSPSPNEPIMTILNNIGGNSIANLNSQLPNP
IYNLC---

---**scrsi*irtri*kkryyseng*titf**fraigcyiyg*twcw*ck**ciinkrr
*q***q*ywlll*elsiqerirkvsrfmyelfrssinfksne*sttfiffiifiik**qy
aksne*fnlck*sspssspstk*fksnk*fititnslilhpl*qyiciniyl*klklkik
*nkkllf

Frame C:
kkk*fiikl*lklqnkvrwl*krlnflhqsykh**vqfkmevhql*ikmvvqlqml*kin
kfynykvnnnsnnnnnkiihnnntitnrvfil*il*ilimynkffvnfknhiil*nkfml
*lkthhlvfq*nqtihnsifiimllklhfsmivihqkw*ilfimnhynmlqplvkmvlkl
llm*rlvffhhnikaqcflqfyi*viqvyhphhlmnql*ps*ii*vviq*qi*ipnyqiq
siifv---

---NRVVEAFKYVPESERKDIIPKMVEQLRSDDLEQLVATFMDELGVGDANSDVSSTKGG
NNNNNNSIGCFCENCPSKKELERFQGLCMNFFVPQSTLNPMNNQQLLYSSLFSSSNDNNT
QSQMNNSISVNNHHHHHHHQPNNSNLTNDLLQLPIV*yyipynntfvlifiykn*n*k*n
kiknyyf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC256 (SLC256Q) /CSM/SL/SLC2-C/SLC256Q.Seq.d/                       1923   0.0
SLK680 (SLK680Q) /CSM/SL/SLK6-D/SLK680Q.Seq.d/                        985   0.0
SSM802 (SSM802Q) /CSM/SS/SSM8-A/SSM802Q.Seq.d/                        565   e-160
SSK402 (SSK402Q) /CSM/SS/SSK4-A/SSK402Q.Seq.d/                        303   4e-81
CHQ241 (CHQ241Q) /CSM/CH/CHQ2-B/CHQ241Q.Seq.d/                        262   1e-68
SSM822 (SSM822Q) /CSM/SS/SSM8-A/SSM822Q.Seq.d/                         50   9e-05
SLA772 (SLA772Q) /CSM/SL/SLA7-C/SLA772Q.Seq.d/                         50   9e-05
AHK380 (AHK380Q) /CSM/AH/AHK3-D/AHK380Q.Seq.d/                         50   9e-05
AHH728 (AHH728Q) /CSM/AH/AHH7-B/AHH728Q.Seq.d/                         50   9e-05
VSG688 (VSG688Q) /CSM/VS/VSG6-D/VSG688Q.Seq.d/                         48   3e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060926) Dictyostelium discoideum slug cDNA, clone SLC256.      957   0.0    2
(AU034205) Dictyostelium discoideum slug cDNA, clone SLC256.     1005   0.0    1
(C83994) Dictyostelium discoideum slug cDNA, clone SLK680.        985   0.0    1
(C93404) Dictyostelium discoideum slug cDNA, clone SSM802.        565   e-156  1
(AF020285) Dictyostelium discoideum DG1062 gene, partial cds.     545   e-150  1
(AU075044) Dictyostelium discoideum slug cDNA, clone SSM802.      351   4e-92  1
(C91533) Dictyostelium discoideum slug cDNA, clone SSK402.        303   9e-78  1
(BJ385223) Dictyostelium discoideum cDNA clone:ddc54a12, 3' ...   262   3e-65  1
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    50   1e-08  14
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    46   2e-08  10
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020285_1(AF020285|pid:none) Dictyostelium discoideum DG1062 ge...   188   4e-46
(O00841) RecName: Full=Putative transcriptional regulator cudA;        67   1e-09
DQ407612_1(DQ407612|pid:none) Physarum polycephalum cudA-like pr...    64   2e-08
DQ407617_1(DQ407617|pid:none) Hartmannella vermiformis cudA-like...    60   2e-07
L39933_2(L39933|pid:none) Entamoeba histolytica pyridine nucleot...    44   0.009
DQ407616_1(DQ407616|pid:none) Hartmannella vermiformis cudA-like...    40   0.14
CR382123_355(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    38   0.68
U20083_1(U20083|pid:none) Streptococcus pneumoniae isolate 23884...    36   3.4
U20084_1(U20084|pid:none) Streptococcus pneumoniae isolate 21241...    36   3.4
DQ071937_1(DQ071937|pid:none) Streptococcus pneumoniae isolate 1...    36   3.4
protein update 2009. 1.21
PSORT 

 psg: 0.80  gvh: 0.39  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLC256 is cyt
5' end seq. ID SLC256F
5' end seq. 
>SLC256F.Seq
AAAAAAAAAAATGATTTATAATCAAGCTTTAATTGAAATTACAAAACAAGGTGCGGTGGC
TGTAGAAGAGATTAAATTTTCTCCACCAAAGTTACAAACATTAATAAGTTCAATTCAAAA
TGGAGGTTCACCAATTATAAATAAAAATGGTAGTCCAGCTGCAAATGCTTTAAAAAATAA
ACAAATTTTACAATTACAAGGTCAACAACAACAGCAACAACAACAACAACAAAATCATTC
ACAACAACAACACAATAACCAATCGAGTGTTTATTCTTTAAATTCTTTAAATCCTTATTA
TGTACAACAAGTTCTTTGTCAACTTCAAAAACCACATAATTTTATAAAACAAGTTCATGT
TGTAGTTAAAAACACACCATTTGGTATTTCAATGAAATCAAACGATCCACAATTCAATTT
TCATAATTATGTTATTAAAGCTACACTTCTCTATGATTGTGATCCACCAAAAATGGTAGA
TTTTATTCATAATGAACCATTACAATATGTTGCAACCGTTAGTGAAGATGGTACTGAAGT
TGTTGTTGATGTAAAGGTTGGTATTCTTTCATCACAACATCAAGGCTCAATGTTTCTTGC
AGTTTTACATATAAGTCATACAAGTGTACCATCCCCATCACCTAATGAACCAATTATGAC
CATCTTGAATAATATAGGTGGTAATTCAATAGCAAATTTAAATTCCCAATTACCAAATCC
AATCTATAATCTTTGTGT----------
Length of 5' end seq. 738
3' end seq. ID SLC256Z
3' end seq. 
>SLC256Z.Seq
----------TTAATAGAGTTGTCGAAGCATTTAAATACGTACCAGAATCTGAAAGAAAA
GATATTATTCCGAAAATGGTTGAACAATTACGTTCTGATGATTTAGAGCAATTGGTTGCT
ACATTTATGGATGAACTTGGTGTTGGTGATGCAAATAGTGATGTATCATCAACAAAAGGA
GGTAACAATAATAATAACAATAGTATTGGTTGCTTCTGTGAGAATTGTCCATCCAAGAAA
GAATTAGAAAGGTTTCAAGGTTTATGTATGAACTTTTTCGTTCCTCAATCAACTTTAAAT
CCAATGAATAATCAACAACTTTTATATTCTTCATTATTTTCATCATCAAATGATAACAAT
ACGCAAAGTCAAATGAATAATTCAATCTCTGTAAATAATCATCACCATCATCATCACCAT
CAACCAAATAATTCAAATCTAACAAATGATTTATTACAATTACCAATAGTTTAATATTAC
ATCCCTTATAACAATACATTTGTATTAATATTTATTTATAAAAATTGAAATTAAAAATAA
AATAAAATAAAAAATTATTATTTTA
Length of 3' end seq. 555
Connected seq. ID SLC256P
Connected seq. 
>SLC256P.Seq
AAAAAAAAAAATGATTTATAATCAAGCTTTAATTGAAATTACAAAACAAGGTGCGGTGGC
TGTAGAAGAGATTAAATTTTCTCCACCAAAGTTACAAACATTAATAAGTTCAATTCAAAA
TGGAGGTTCACCAATTATAAATAAAAATGGTAGTCCAGCTGCAAATGCTTTAAAAAATAA
ACAAATTTTACAATTACAAGGTCAACAACAACAGCAACAACAACAACAACAAAATCATTC
ACAACAACAACACAATAACCAATCGAGTGTTTATTCTTTAAATTCTTTAAATCCTTATTA
TGTACAACAAGTTCTTTGTCAACTTCAAAAACCACATAATTTTATAAAACAAGTTCATGT
TGTAGTTAAAAACACACCATTTGGTATTTCAATGAAATCAAACGATCCACAATTCAATTT
TCATAATTATGTTATTAAAGCTACACTTCTCTATGATTGTGATCCACCAAAAATGGTAGA
TTTTATTCATAATGAACCATTACAATATGTTGCAACCGTTAGTGAAGATGGTACTGAAGT
TGTTGTTGATGTAAAGGTTGGTATTCTTTCATCACAACATCAAGGCTCAATGTTTCTTGC
AGTTTTACATATAAGTCATACAAGTGTACCATCCCCATCACCTAATGAACCAATTATGAC
CATCTTGAATAATATAGGTGGTAATTCAATAGCAAATTTAAATTCCCAATTACCAAATCC
AATCTATAATCTTTGTGT----------TTAATAGAGTTGTCGAAGCATTTAAATACGTA
CCAGAATCTGAAAGAAAAGATATTATTCCGAAAATGGTTGAACAATTACGTTCTGATGAT
TTAGAGCAATTGGTTGCTACATTTATGGATGAACTTGGTGTTGGTGATGCAAATAGTGAT
GTATCATCAACAAAAGGAGGTAACAATAATAATAACAATAGTATTGGTTGCTTCTGTGAG
AATTGTCCATCCAAGAAAGAATTAGAAAGGTTTCAAGGTTTATGTATGAACTTTTTCGTT
CCTCAATCAACTTTAAATCCAATGAATAATCAACAACTTTTATATTCTTCATTATTTTCA
TCATCAAATGATAACAATACGCAAAGTCAAATGAATAATTCAATCTCTGTAAATAATCAT
CACCATCATCATCACCATCAACCAAATAATTCAAATCTAACAAATGATTTATTACAATTA
CCAATAGTTTAATATTACATCCCTTATAACAATACATTTGTATTAATATTTATTTATAAA
AATTGAAATTAAAAATAAAATAAAATAAAAAATTATTATTTTA
Length of connected seq. 1293
Full length Seq ID -
Full length Seq. -
Length of full length seq. -