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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC254
Library SL
(Link to library)
Clone ID SLC254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLC254P
(Link to Original site)
Representative DNA sequence 
>SLC254 (SLC254Q) /CSM/SL/SLC2-C/SLC254Q.Seq.d/
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATATATATTTTTTTTTTATTTA
AATTTAANATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACATAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCTCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCNCAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTCXXXXXXXXXXACTTAATGGAGCATTTCCACAACCATTTCCAT
TATCTTCTACACAAAAGAATTTCTTTGTACCACAACATGAAACAAAAGGTAAATACTTAC
AACCAGAATTTGGTGCTTTACATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAG
GTTTCCACCATTTATCATGTTCCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTA
AAACCAAACATACTAATAAATTATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATT
TATTTAATTTAGTTGATTAAAAAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATA
TAAAACAAATAAGATATAAGATTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCT
TAAAATTTTCGTTGGCGCCATTTCACACTAACCCAAAACACTGGTATTCCAATGGGATTT
TTATTAATTTTTTTAAAAAAAAAGTATATGGGTACTATGGAAGATGGGTATAAATCGATT
TTATTA
sequence update 1999. 1.11
Translated Amino Acid sequence 
lvldrerspffffffffffffffffffffff*kyifffylnlxwsysiwxtnwnsscisn
tfssw*tfykft*wgtt*lf**tnfi*ftsdnwatwn**sitlifiiiisiriiiiiiir
i*w*ttrwnlntavtrtswtfirnhcaiq*TXINIMTSFTMTWMGF---

---LNGAFPQPFPLSSTQKNFFVPQHETKGKYLQPEFGALHWSSDKLSQFLGGGFHHLSC
SGFALLIDNVEKTKTKHTNKLFILIFFIFLFYYLFNLVD*kkkclssfiyiinikqiryk
isskmlck*sptllkfslapfhtnpkhwysngifinffkkkvygyygrwv*idfi
Translated Amino Acid sequence (All Frames) 
Frame A:
lvldrerspffffffffffffffffffffff*kyifffylnlxwsysiwxtnwnsscisn
tfssw*tfykft*wgtt*lf**tnfi*ftsdnwatwn**sitlifiiiisiriiiiiiir
i*w*ttrwnlntavtrtswtfirnhcaiq*TXINIMTSFTMTWMGF---

---t*wsisttisiifytkeflcttt*nkr*ilttriwcftlvl*qtitisrrrfppfim
fricitn**c*en*nqty**iiyphffyffillfi*fs*lkkkmfeflyihy*yktnki*
dfeqnamqiithslkifvgaish*pktlvfqwdfy*ff*kksiwvlwkmginrfy

Frame B:
*f*iasgrpffffffffffffffffffffffeniyfffi*i*xgvipfgkqtgipvvsat
hlvpgehftnshngaqrdcsnkqisfnlqviigphgidnpspsfslssyplgsls*ssle
fdgkrhdgi*iqqsreplghllgtiaqsnepqlts*qvlq*pgwv---

---LNGAFPQPFPLSSTQKNFFVPQHETKGKYLQPEFGALHWSSDKLSQFLGGGFHHLSC
SGFALLIDNVEKTKTKHTNKLFILIFFIFLFYYLFNLVD*kkkclssfiyiinikqiryk
isskmlck*sptllkfslapfhtnpkhwysngifinffkkkvygyygrwv*idfi

Frame C:
ssrsravalffffffffffffffffffffflkiyifflfkfxmelfhlxnklefqlyqqh
i*flvnilqihimghnvivlinkfhliyk**lghmeliihhphfhyhhih*dhyhnhh*n
lmvndtmefeysshenlldiy*eplrnpmnxn*hhdkfyndldgf---

---lmehfhnhfhyllhkrislyhnmkqkvntynqnlvlyigpltnyhnf*eevstiyhv
pdlhy*limlrklkpnilinylssfflffyfiiyli*likkknv*vplytlli*nk*dir
frakcyannhpls*nfrwrhftltqntgipmgflliflkkkymgtmedgyksill
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC254 (SLC254Q) /CSM/SL/SLC2-C/SLC254Q.Seq.d/                        716   0.0
SLJ560 (SLJ560Q) /CSM/SL/SLJ5-C/SLJ560Q.Seq.d/                        484   e-135
SLF361 (SLF361Q) /CSM/SL/SLF3-C/SLF361Q.Seq.d/                        484   e-135
SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/                        484   e-135
SLC236 (SLC236Q) /CSM/SL/SLC2-B/SLC236Q.Seq.d/                        484   e-135
SFL363 (SFL363Q) /CSM/SF/SFL3-C/SFL363Q.Seq.d/                        484   e-135
SFK851 (SFK851Q) /CSM/SF/SFK8-C/SFK851Q.Seq.d/                        484   e-135
SFJ163 (SFJ163Q) /CSM/SF/SFJ1-C/SFJ163Q.Seq.d/                        484   e-135
SFE669 (SFE669Q) /CSM/SF/SFE6-C/SFE669Q.Seq.d/                        484   e-135
CHC584 (CHC584Q) /CSM/CH/CHC5-D/CHC584Q.Seq.d/                        484   e-135
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034203) Dictyostelium discoideum slug cDNA, clone SLC254.      484   0.0    3
(AU034188) Dictyostelium discoideum slug cDNA, clone SLC236.      484   0.0    3
(AU060925) Dictyostelium discoideum slug cDNA, clone SLC254.      339   e-171  3
(AU060919) Dictyostelium discoideum slug cDNA, clone SLC236.      331   e-166  3
(AU052447) Dictyostelium discoideum slug cDNA, clone SLD330.      339   e-162  2
(AU052383) Dictyostelium discoideum slug cDNA, clone SLD229.      339   e-162  2
(AU034367) Dictyostelium discoideum slug cDNA, clone SLC755.      339   e-162  2
(AU039609) Dictyostelium discoideum slug cDNA, clone SLE835.      339   e-162  2
(AU053303) Dictyostelium discoideum slug cDNA, clone SLI350.      339   e-162  2
(AU052969) Dictyostelium discoideum slug cDNA, clone SLF408.      339   e-162  2
dna update 2009. 2.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   214   5e-54
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        50   1e-04
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    47   0.001
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    47   0.001
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    39   0.21
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    37   1.1
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    36   1.8
AL662947_2(AL662947|pid:none) Oryza sativa genomic DNA, chromoso...    35   5.3
CR855176_2(CR855176|pid:none) Oryza sativa (indica cultivar-grou...    35   5.3
protein update 2009. 1.21
PSORT 

 psg: 0.96  gvh: 0.53  alm: 0.20  top: 0.30  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLC254 is nuc
5' end seq. ID SLC254F
5' end seq. 
>SLC254F.Seq
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATATATATTTTTTTTTTATTTA
AATTTAANATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACATAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCTCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCNCAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTC----------
Length of 5' end seq. 498
3' end seq. ID SLC254Z
3' end seq. 
>SLC254Z.Seq
----------ACTTAATGGAGCATTTCCACAACCATTTCCATTATCTTCTACACAAAAGA
ATTTCTTTGTACCACAACATGAAACAAAAGGTAAATACTTACAACCAGAATTTGGTGCTT
TACATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAGGTTTCCACCATTTATCAT
GTTCCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTAAAACCAAACATACTAATA
AATTATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATTTATTTAATTTAGTTGATT
AAAAAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATATAAAACAAATAAGATATA
AGATTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCTTAAAATTTTCGTTGGCGC
CATTTCACACTAACCCAAAACACTGGTATTCCAATGGGATTTTTATTAATTTTTTTAAAA
AAAAAGTATATGGGTACTATGGAAGATGGGTATAAATCGATTTTATTA
Length of 3' end seq. 518
Connected seq. ID SLC254P
Connected seq. 
>SLC254P.Seq
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATATATATTTTTTTTTTATTTA
AATTTAANATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACATAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCTCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCNCAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTC----------ACTTAATGGAGCATTTCCACAACCATTTCCAT
TATCTTCTACACAAAAGAATTTCTTTGTACCACAACATGAAACAAAAGGTAAATACTTAC
AACCAGAATTTGGTGCTTTACATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAG
GTTTCCACCATTTATCATGTTCCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTA
AAACCAAACATACTAATAAATTATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATT
TATTTAATTTAGTTGATTAAAAAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATA
TAAAACAAATAAGATATAAGATTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCT
TAAAATTTTCGTTGGCGCCATTTCACACTAACCCAAAACACTGGTATTCCAATGGGATTT
TTATTAATTTTTTTAAAAAAAAAGTATATGGGTACTATGGAAGATGGGTATAAATCGATT
TTATTA
Length of connected seq. 1016
Full length Seq ID -
Full length Seq. -
Length of full length seq. -