SLC252
Library SL
(Link to library)
Clone ID SLC252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SLC252Z
(Link to Original site)
Representative DNA sequence
>SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/
XXXXXXXXXXCGTAATGTTGTAAGACAAGTATGTGCTGGTGTTGAAATATCTCCATTCAC
AAGGTATTGCTCATAGAGATTTGAACCCAGAGAATTTATTATGTAATGGTGAAGGTGAAG
ATATGACAATCAAAATTGCAGATTTTGGTCTTAGTAAAATATTTGGAACTGGTGAAGCAT
TGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTAACTGGTGGTTCAT
ATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTT
TCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATT
ATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAA
ACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTT
GGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTG
AAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTT
AATAATAATAATAAT
sequence update 1998. 4.25
Translated Amino Acid sequence
---vml*DKYVLVLKYLHSQGIAHRDLNPENLLCNGEGEDMTIKIADFGLSKIFGTGEAL
ETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILTADY
DFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSHFAE
KMKKYNDQRRGGQSSNN*i*****


Translated Amino Acid sequence (All Frames)
Frame A:
---vml*DKYVLVLKYLHSQGIAHRDLNPENLLCNGEGEDMTIKIADFGLSKIFGTGEAL
ETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKILTADY
DFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLHSHFAE
KMKKYNDQRRGGQSSNN*i*****


Frame B:
---*ccktsmcwc*nisihkvlliei*tqriyyvmvkvki*qsklqilvlvkylelvkhw
kqvvvhqimlhqkf*lvvhmimqsicgqlvslpifyyvvshhsmlhlktyylkkf*plim
isqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinqlvlllistlislk
r*rnimtkeevvnlqiikfnnnnn


Frame C:
---nvvrqvcagveispftrycs*rfeprefim*w*r*rydnqncrfws**niwnw*sig
nklwytrlcctrsfnwwfi**csryvvnwchylyfimwfptilcfisklii*knfnr*l*
fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw**sinwfcc*splsfr*k
deei**pkkrwsifk*lnliiii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/ 1144 0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/ 1120 0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/ 1112 0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/ 1063 0.0
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/ 1059 0.0
SFK820 (SFK820Q) /CSM/SF/SFK8-A/SFK820Q.Seq.d/ 1051 0.0
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/ 1039 0.0
AFL780 (AFL780Q) /CSM/AF/AFL7-D/AFL780Q.Seq.d/ 1035 0.0
CFB218 (CFB218Q) /CSM/CF/CFB2-A/CFB218Q.Seq.d/ 995 0.0
SFH150 (SFH150Q) /CSM/SF/SFH1-C/SFH150Q.Seq.d/ 991 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034202) Dictyostelium discoideum slug cDNA, clone SLC252. 1144 0.0 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1066 0.0 2
(C90109) Dictyostelium discoideum slug cDNA, clone SSI101. 1066 0.0 2
(C91976) Dictyostelium discoideum slug cDNA, clone SSC643. 1059 0.0 2
(BJ431378) Dictyostelium discoideum cDNA clone:ddv14a01, 3' ... 961 0.0 4
(BJ432814) Dictyostelium discoideum cDNA clone:ddv19n19, 3' ... 1003 0.0 2
(BJ431323) Dictyostelium discoideum cDNA clone:ddv13b21, 3' ... 985 0.0 3
(BJ401086) Dictyostelium discoideum cDNA clone:dds22h06, 3' ... 969 0.0 3
(BJ346766) Dictyostelium discoideum cDNA clone:dda24p19, 3' ... 928 0.0 4
(BJ373418) Dictyostelium discoideum cDNA clone:ddc3c06, 3' e... 942 0.0 2
dna update 2009. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser... 375 e-104
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso... 192 6e-48
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f... 183 4e-45
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-... 177 2e-43
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C... 177 2e-43
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 177 3e-43
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c... 176 5e-43
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina... 176 5e-43
(Q8BW96) RecName: Full=Calcium/calmodulin-dependent protein kina... 176 5e-43
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-... 176 6e-43
protein update 2009. 6. 1
PSORT

psg: 0.77 gvh: 0.54 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial

>> prediction for SLC252 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC252Z
3' end seq.
>SLC252Z.Seq
----------CGTAATGTTGTAAGACAAGTATGTGCTGGTGTTGAAATATCTCCATTCAC
AAGGTATTGCTCATAGAGATTTGAACCCAGAGAATTTATTATGTAATGGTGAAGGTGAAG
ATATGACAATCAAAATTGCAGATTTTGGTCTTAGTAAAATATTTGGAACTGGTGAAGCAT
TGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTAACTGGTGGTTCAT
ATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTT
TCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATT
ATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAA
ACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTT
GGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTG
AAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTT
AATAATAATAATAAT
Length of 3' end seq. 605
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -