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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC248
Library SL
(Link to library)
Clone ID SLC248
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15319-1|Contig-U15640-1
Original site URL
Representative seq. ID SLC248P
(Link to Original site)
Representative DNA sequence 
>SLC248 (SLC248Q) /CSM/SL/SLC2-B/SLC248Q.Seq.d/
GAAAAAAGAAGAAAAAGCTAAAATAAAAATCAAAGAAAAAGTGAAAGAAAAAGAAAAAGA
AAAAGAGGACAAAGTGGAAAAAGAAAAAGAAGATGAAACTAAAAAAACTAATGGAAATAA
AAATAATAATAATAGTAGAAGAGTTTTAGAGAATGGTACAATTATATTTTGTGAATGGAG
AGAACAACAATTTATTAAATGTGATATTATTGAAAAGAGAGAATCAGAATTAAAGAATGG
AACCTATGATTATTATGTACATTACCATGAATTCAATCGTCGTTTAGATGAATGGGTGCA
TGAATCAAGAATGGATTTCAGTAGAGTTATTGAAAAGAAACAACCAGTGAATAGTATAAC
AGCAATTAATTCACATGGTGGTGGAGCTGGTGGAAGCGGTGGTGGTGGCGCCAATGGTGA
GAATGGTATTACTGGTGGCAATAAGAAACAACCACCAAAAAGACCATCTCAAAAAGGTTC
AATGGTAATGGATGACGATTCAAAACTATCAGAATTGGAGAAAGAACATGAAGAAATTAC
TAAAGTGAAGAATATTAATGTTATAGAGTTGGGTCGTTATGAAATTGACACATGGTATTT
CTCACCCTATCCAGAGGAGTTTACAAAAACTGATAAACTGTACCTCTGTGAGTTTTGTTT
GAAXXXXXXXXXXCTTTTACATTATGACCGAATATGACGAACGTGGTTGCCATATGGTCG
GCTATTTCTCAAAGGAAAAGGAATCACCTGATGGTAATAATTTAGCTTGTATTCTAACAT
TACCACCCTACCAAAGAAAAGGTTTTGGCAAATTATTAATTTCATTCTCTTATGAACTCT
CAAAGAAGGAAGGTAAAGTTGGCACACCCGAAAAACCATTATCAGATTTGGGTCTTCTCT
CCTACAGATCATATTGGACTCAAGTACTTTTGGAAATCTTAAAAACTCATAAAGGAAATC
TTTCAATCACTGATATCTCCAATATTTCCGCCATTAGAACTGAGGATGTTATCAGCACTC
TACAATCACTCAATCTCATAAGATATTGGAAAGGTCAACATGTTATTCATATCACTCCAA
AAACACTAGATGATCACTTGAATATTTATGCAAAACAAACTTCAAAAATTGATCCAAAAT
GTATTCATTGGGTGCCTCCTATTGTGAATGTTAAAAAACATCGTTAAAAAAA
sequence update 1999. 1.11
Translated Amino Acid sequence 
KKEEKAKIKIKEKVKEKEKEKEDKVEKEKEDETKKTNGNKNNNNSRRVLENGTIIFCEWR
EQQFIKCDIIEKRESELKNGTYDYYVHYHEFNRRLDEWVHESRMDFSRVIEKKQPVNSIT
AINSHGGGAGGSGGGGANGENGITGGNKKQPPKRPSQKGSMVMDDDSKLSELEKEHEEIT
KVKNINVIELGRYEIDTWYFSPYPEEFTKTDKLYLCEFCL---

---FYIMTEYDERGCHMVGYFSKEKESPDGNNLACILTLPPYQRKGFGKLLISFSYELSK
KEGKVGTPEKPLSDLGLLSYRSYWTQVLLEILKTHKGNLSITDISNISAIRTEDVISTLQ
SLNLIRYWKGQHVIHITPKTLDDHLNIYAKQTSKIDPKCIHWVPPIVNVKKHR*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ekrrks*nknqrkserkrkrkrgqsgkrkrr*n*kn*wk*k*****ksfrewynyil*me
rttiy*m*yy*keririkewnl*llctlp*iqssfr*mga*ikngfq*sy*kettse*yn
sn*ftwwwswwkrwwwrqw*ewyywwq*etttkktiskrfngng*rfktirigert*rny
*seey*cyrvgsl*n*hmvfltlsrgvykn**tvpl*vlfe---

---llhydri*rtwlpygrlflkgkgit*w**fslysnittlpkkrfwqiinfill*tlk
egr*swhtrktiirfgssllqiildsstfgnlkns*rksfnh*ylqyfrh*n*gcyqhst
itqshkilerstcysyhskntr*sleylcktnfkn*skmyslgasycec*ktslkk

Frame B:
KKEEKAKIKIKEKVKEKEKEKEDKVEKEKEDETKKTNGNKNNNNSRRVLENGTIIFCEWR
EQQFIKCDIIEKRESELKNGTYDYYVHYHEFNRRLDEWVHESRMDFSRVIEKKQPVNSIT
AINSHGGGAGGSGGGGANGENGITGGNKKQPPKRPSQKGSMVMDDDSKLSELEKEHEEIT
KVKNINVIELGRYEIDTWYFSPYPEEFTKTDKLYLCEFCL---

---FYIMTEYDERGCHMVGYFSKEKESPDGNNLACILTLPPYQRKGFGKLLISFSYELSK
KEGKVGTPEKPLSDLGLLSYRSYWTQVLLEILKTHKGNLSITDISNISAIRTEDVISTLQ
SLNLIRYWKGQHVIHITPKTLDDHLNIYAKQTSKIDPKCIHWVPPIVNVKKHR*k

Frame C:
kkkkklk*kskkk*kkkkkkkrtkwkkkkkmklkklmeikiiiiveef*rmvqlyfvnge
nnnllnvillkrenqn*rmepmiimyitmnsivv*mngcmnqewisvellkrnnq*iv*q
qlihmvvelveavvvapmvrmvllvairnnhqkdhlkkvqw*wmtiqnyqnwrknmkkll
k*rilml*swvvmklthgishpiqrslqklinctsvsfv*---

---ftl*pnmtnvvaiwsaisqrkrnhlmvii*lvf*hyhptkekvlany*fhslmnsqr
rkvklahpknhyqiwvfsptdhiglkyfwks*klikeifqslispifpplelrmlsalyn
hsis*digkvnmlfislqkh*mit*ifmqnklqkliqnvfigclll*mlknivkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC248 (SLC248Q) /CSM/SL/SLC2-B/SLC248Q.Seq.d/                       2077   0.0
SSK585 (SSK585Q) /CSM/SS/SSK5-D/SSK585Q.Seq.d/                       1007   0.0
AHF367 (AHF367Q) /CSM/AH/AHF3-C/AHF367Q.Seq.d/                        950   0.0
CFJ619 (CFJ619Q) /CSM/CF/CFJ6-A/CFJ619Q.Seq.d/                        908   0.0
AFK406 (AFK406Q) /CSM/AF/AFK4-A/AFK406Q.Seq.d/                        860   0.0
CFA681 (CFA681Q) /CSM/CF/CFA6-D/CFA681Q.Seq.d/                        844   0.0
AFL878 (AFL878Q) /CSM/AF/AFL8-D/AFL878Q.Seq.d/                        789   0.0
CFH442 (CFH442Q) /CSM/CF/CFH4-B/CFH442Q.Seq.d/                        741   0.0
SLJ809 (SLJ809Q) /CSM/SL/SLJ8-A/SLJ809Q.Seq.d/                        476   e-133
CHR618 (CHR618Q) /CSM/CH/CHR6-A/CHR618Q.Seq.d/                         46   0.001
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1007   0.0    3
(AU034199) Dictyostelium discoideum slug cDNA, clone SLC248.     1015   0.0    1
(C94243) Dictyostelium discoideum slug cDNA, clone SSK585.       1007   0.0    1
(BJ350958) Dictyostelium discoideum cDNA clone:dda41f17, 3' ...   896   0.0    3
(BJ375811) Dictyostelium discoideum cDNA clone:ddc20e06, 3' ...   896   0.0    2
(AU060923) Dictyostelium discoideum slug cDNA, clone SLC248.      478   0.0    2
(BJ346746) Dictyostelium discoideum cDNA clone:dda24l20, 3' ...   789   0.0    2
(BJ344964) Dictyostelium discoideum cDNA clone:dda21l02, 3' ...   819   0.0    2
(BJ373317) Dictyostelium discoideum cDNA clone:ddc2a22, 3' e...   581   0.0    3
(BJ362083) Dictyostelium discoideum cDNA clone:ddc20e06, 5' ...   446   0.0    2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_57(AC116305|pid:none) Dictyostelium discoideum chromoso...   351   3e-95
AF217501_1(AF217501|pid:none) Homo sapiens histone acetyltransfe...   231   5e-59
(Q9H7Z6) RecName: Full=Probable histone acetyltransferase MYST1;...   231   5e-59
(Q5XI06) RecName: Full=Probable histone acetyltransferase MYST1;...   231   5e-59
AX405609_1(AX405609|pid:none) Sequence 24 from Patent WO0222660.      231   5e-59
AK132000_1(AK132000|pid:none) Mus musculus 11 days embryo whole ...   231   5e-59
BC133611_1(BC133611|pid:none) Bos taurus MYST histone acetyltran...   231   5e-59
AF260665_1(AF260665|pid:none) Homo sapiens histone acetyltransfe...   231   5e-59
BC036284_1(BC036284|pid:none) Mus musculus MYST histone acetyltr...   230   8e-59
BC155277_1(BC155277|pid:none) Danio rerio MYST histone acetyltra...   229   1e-58
protein update 2009. 6. 1
PSORT 

 psg: 0.16  gvh: 0.20  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLC248 is cyt
5' end seq. ID SLC248F
5' end seq. 
>SLC248F.Seq
GAAAAAAGAAGAAAAAGCTAAAATAAAAATCAAAGAAAAAGTGAAAGAAAAAGAAAAAGA
AAAAGAGGACAAAGTGGAAAAAGAAAAAGAAGATGAAACTAAAAAAACTAATGGAAATAA
AAATAATAATAATAGTAGAAGAGTTTTAGAGAATGGTACAATTATATTTTGTGAATGGAG
AGAACAACAATTTATTAAATGTGATATTATTGAAAAGAGAGAATCAGAATTAAAGAATGG
AACCTATGATTATTATGTACATTACCATGAATTCAATCGTCGTTTAGATGAATGGGTGCA
TGAATCAAGAATGGATTTCAGTAGAGTTATTGAAAAGAAACAACCAGTGAATAGTATAAC
AGCAATTAATTCACATGGTGGTGGAGCTGGTGGAAGCGGTGGTGGTGGCGCCAATGGTGA
GAATGGTATTACTGGTGGCAATAAGAAACAACCACCAAAAAGACCATCTCAAAAAGGTTC
AATGGTAATGGATGACGATTCAAAACTATCAGAATTGGAGAAAGAACATGAAGAAATTAC
TAAAGTGAAGAATATTAATGTTATAGAGTTGGGTCGTTATGAAATTGACACATGGTATTT
CTCACCCTATCCAGAGGAGTTTACAAAAACTGATAAACTGTACCTCTGTGAGTTTTGTTT
GAA----------
Length of 5' end seq. 663
3' end seq. ID SLC248Z
3' end seq. 
>SLC248Z.Seq
----------CTTTTACATTATGACCGAATATGACGAACGTGGTTGCCATATGGTCGGCT
ATTTCTCAAAGGAAAAGGAATCACCTGATGGTAATAATTTAGCTTGTATTCTAACATTAC
CACCCTACCAAAGAAAAGGTTTTGGCAAATTATTAATTTCATTCTCTTATGAACTCTCAA
AGAAGGAAGGTAAAGTTGGCACACCCGAAAAACCATTATCAGATTTGGGTCTTCTCTCCT
ACAGATCATATTGGACTCAAGTACTTTTGGAAATCTTAAAAACTCATAAAGGAAATCTTT
CAATCACTGATATCTCCAATATTTCCGCCATTAGAACTGAGGATGTTATCAGCACTCTAC
AATCACTCAATCTCATAAGATATTGGAAAGGTCAACATGTTATTCATATCACTCCAAAAA
CACTAGATGATCACTTGAATATTTATGCAAAACAAACTTCAAAAATTGATCCAAAATGTA
TTCATTGGGTGCCTCCTATTGTGAATGTTAAAAAACATCGTTAAAAAAA
Length of 3' end seq. 519
Connected seq. ID SLC248P
Connected seq. 
>SLC248P.Seq
GAAAAAAGAAGAAAAAGCTAAAATAAAAATCAAAGAAAAAGTGAAAGAAAAAGAAAAAGA
AAAAGAGGACAAAGTGGAAAAAGAAAAAGAAGATGAAACTAAAAAAACTAATGGAAATAA
AAATAATAATAATAGTAGAAGAGTTTTAGAGAATGGTACAATTATATTTTGTGAATGGAG
AGAACAACAATTTATTAAATGTGATATTATTGAAAAGAGAGAATCAGAATTAAAGAATGG
AACCTATGATTATTATGTACATTACCATGAATTCAATCGTCGTTTAGATGAATGGGTGCA
TGAATCAAGAATGGATTTCAGTAGAGTTATTGAAAAGAAACAACCAGTGAATAGTATAAC
AGCAATTAATTCACATGGTGGTGGAGCTGGTGGAAGCGGTGGTGGTGGCGCCAATGGTGA
GAATGGTATTACTGGTGGCAATAAGAAACAACCACCAAAAAGACCATCTCAAAAAGGTTC
AATGGTAATGGATGACGATTCAAAACTATCAGAATTGGAGAAAGAACATGAAGAAATTAC
TAAAGTGAAGAATATTAATGTTATAGAGTTGGGTCGTTATGAAATTGACACATGGTATTT
CTCACCCTATCCAGAGGAGTTTACAAAAACTGATAAACTGTACCTCTGTGAGTTTTGTTT
GAA----------CTTTTACATTATGACCGAATATGACGAACGTGGTTGCCATATGGTCG
GCTATTTCTCAAAGGAAAAGGAATCACCTGATGGTAATAATTTAGCTTGTATTCTAACAT
TACCACCCTACCAAAGAAAAGGTTTTGGCAAATTATTAATTTCATTCTCTTATGAACTCT
CAAAGAAGGAAGGTAAAGTTGGCACACCCGAAAAACCATTATCAGATTTGGGTCTTCTCT
CCTACAGATCATATTGGACTCAAGTACTTTTGGAAATCTTAAAAACTCATAAAGGAAATC
TTTCAATCACTGATATCTCCAATATTTCCGCCATTAGAACTGAGGATGTTATCAGCACTC
TACAATCACTCAATCTCATAAGATATTGGAAAGGTCAACATGTTATTCATATCACTCCAA
AAACACTAGATGATCACTTGAATATTTATGCAAAACAAACTTCAAAAATTGATCCAAAAT
GTATTCATTGGGTGCCTCCTATTGTGAATGTTAAAAAACATCGTTAAAAAAA
Length of connected seq. 1182
Full length Seq ID -
Full length Seq. -
Length of full length seq. -