NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC246
Library SL
(Link to library)
Clone ID SLC246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16247-1
Original site URL
Representative seq. ID SLC246P
(Link to Original site)
Representative DNA sequence 
>SLC246 (SLC246Q) /CSM/SL/SLC2-B/SLC246Q.Seq.d/
AAAAAAGAATTAAAAATGGTTACTAAAAAGGAATTTCTTGAAGAATTAACAAATGCAACA
AATGAAGCAATTAAAGCAGCTGATAAAAATGGTGATAACCAATTATCAAAGAAAGAAGTT
AATGACATGTACAAGAAATGCAAATACCCAAACCCAACTTTGGCAACCAATTCATTATTT
GAACTATTTGATCTTGACAAAGATGGAAAACTTTCGGTTAATGAAGTTAAAACTGCAGTA
CTTGTAGATTATATTATTGAAGCTGAAACTTGTTTAAAAAAATTCGTTGATATTATTTTT
AAGGCTGATTCAAATAAAGATAATAAAATTACTTGGGATGAGGCCAGACAATATTTCATT
ACTAGTGGTTCAAATGAAGCTCAAGCTAAAGTCTTGGCCAACTCAATGTTTGAAGATGTG
GATTCTGATGATGACAAATGTATTACACGTGAAGAACTTAGAGAATATGCCATTGAATAT
TTTGAAATTTATCCAACTGAATAATTATTTCCATAAAAATAATCTCAATTTAAGTCAGTC
TTAAAAAXXXXXXXXXXGCCAAAGGTTTTCCCCGGGAGGACCTTGGGGAAATGCCCATGG
AAATTTTGGAAATTTTCCCACCGGAAAAATTTTTCCCATAAAAAAAACCCCATTTAAGGC
CGGCTTTAAAAAATTAATTAAAAAATTAAAACCTTTTTTTAATTTTTTTTAATTTTTTTT
TTTTTTTTCCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.11
Translated Amino Acid sequence 
kkelkmvtkkefleeltnatneaikaadkngdnqlskkevndmykkckypnptlatnslf
elfdldkdgklsvnevktavlvdyiieaetclkkfvdiifkadsnkdnkitwdearqyfi
tsgsneaqakvlansmfedvdsdddkcitreelreyaieyfeiypte*lfp*k*SQFKSV
LK---

---QRFSPGGPWGNAHGNFGNFPTGKIFPIKKTPFKAGFKKLIKKLKPFFNFF*fffffs
iqkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkelkmvtkkefleeltnatneaikaadkngdnqlskkevndmykkckypnptlatnslf
elfdldkdgklsvnevktavlvdyiieaetclkkfvdiifkadsnkdnkitwdearqyfi
tsgsneaqakvlansmfedvdsdddkcitreelreyaieyfeiypte*lfp*k*SQFKSV
LK---

---akgfpredlgempmeileifppekffp*kkphlrpalkn*lkn*nlfliffnfffff
pskkkkkkkkkkk

Frame B:
kkn*kwllkrnflkn*qmqqmkqlkqlikmvitnyqrkklmtctrnantqtqlwqpihyl
nyliltkmenfrlmklklqyl*iillklklv*knslilflrliqikiikllgmrpdnisl
lvvqmklklkswptqclkmwilmmtnvlhvknlenmplnilkfiqlnnyfhknnlnlsqs
*k---

---pkvfpgrtlgkcpwkfwkfshrknfshkknpi*grl*kin*kiktff*fflifffff
hpkkkkkkkkkk

Frame C:
krikngy*kgis*rinkcnk*sn*ss**kw**piikers**hvqemqipkpnfgnqfii*
ti*s*qrwktfg**s*ncstcrlyy*s*nlfkkir*yyf*g*fk*r**nylg*gqtifhy
*wfk*sss*slgqlnv*rcgf***qmyyt*rt*rich*if*nlsn*iiisikiisi*vsl
k---

---QRFSPGGPWGNAHGNFGNFPTGKIFPIKKTPFKAGFKKLIKKLKPFFNFF*fffffs
iqkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC246 (SLC246Q) /CSM/SL/SLC2-B/SLC246Q.Seq.d/                       1164   0.0
SSC232 (SSC232Q) /CSM/SS/SSC2-B/SSC232Q.Seq.d/                       1043   0.0
VSJ863 (VSJ863Q) /CSM/VS/VSJ8-C/VSJ863Q.Seq.d/                        880   0.0
VSF743 (VSF743Q) /CSM/VS/VSF7-B/VSF743Q.Seq.d/                        872   0.0
AHK628 (AHK628Q) /CSM/AH/AHK6-B/AHK628Q.Seq.d/                        870   0.0
AHE640 (AHE640Q) /CSM/AH/AHE6-B/AHE640Q.Seq.d/                        870   0.0
SSK828 (SSK828Q) /CSM/SS/SSK8-B/SSK828Q.Seq.d/                        868   0.0
SSK762 (SSK762Q) /CSM/SS/SSK7-C/SSK762Q.Seq.d/                        868   0.0
SSK659 (SSK659Q) /CSM/SS/SSK6-C/SSK659Q.Seq.d/                        868   0.0
SSK380 (SSK380Q) /CSM/SS/SSK3-D/SSK380Q.Seq.d/                        868   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91921) Dictyostelium discoideum slug cDNA, clone SSC232.        545   0.0    2
(AU060922) Dictyostelium discoideum slug cDNA, clone SLC246.      545   0.0    2
(AU270595) Dictyostelium discoideum vegetative cDNA clone:VS...   454   0.0    3
(AU270594) Dictyostelium discoideum vegetative cDNA clone:VS...   545   0.0    2
(AU265718) Dictyostelium discoideum vegetative cDNA clone:VS...   470   0.0    2
(BJ402206) Dictyostelium discoideum cDNA clone:dds20g23, 3' ...   464   0.0    2
(BJ354040) Dictyostelium discoideum cDNA clone:dda52g08, 3' ...   464   0.0    2
(BJ350609) Dictyostelium discoideum cDNA clone:dda40o10, 3' ...   464   0.0    2
(C91517) Dictyostelium discoideum slug cDNA, clone SSK380.        462   0.0    2
(BJ335993) Dictyostelium discoideum cDNA clone:dda52g08, 5' ...   462   0.0    2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RF4) RecName: Full=Calcium-binding protein 4a;                    301   2e-80
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...   298   9e-80
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    60   1e-07
AY655131_1(AY655131|pid:none) Dictyostelium discoideum NCS-1/fre...    53   9e-06
AE014186_83(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    53   9e-06
AF202094_1(AF202094|pid:none) Plasmodium falciparum isolate FCC1...    53   9e-06
(Q9SU00) RecName: Full=Calmodulin-like protein 2; AltName: Full=...    50   1e-04
EF144933_1(EF144933|pid:none) Populus trichocarpa clone WS0111_A...    49   2e-04
(O18757) RecName: Full=Calcium-binding mitochondrial carrier pro...    47   6e-04
(Q9SRR7) RecName: Full=Calmodulin-like protein 3;  &AC009853_20(...    47   8e-04
protein update 2009. 6. 1
PSORT 

 psg: 0.85  gvh: 0.29  alm: 0.57  top: 0.57  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLC246 is nuc
5' end seq. ID SLC246F
5' end seq. 
>SLC246F.Seq
AAAAAAGAATTAAAAATGGTTACTAAAAAGGAATTTCTTGAAGAATTAACAAATGCAACA
AATGAAGCAATTAAAGCAGCTGATAAAAATGGTGATAACCAATTATCAAAGAAAGAAGTT
AATGACATGTACAAGAAATGCAAATACCCAAACCCAACTTTGGCAACCAATTCATTATTT
GAACTATTTGATCTTGACAAAGATGGAAAACTTTCGGTTAATGAAGTTAAAACTGCAGTA
CTTGTAGATTATATTATTGAAGCTGAAACTTGTTTAAAAAAATTCGTTGATATTATTTTT
AAGGCTGATTCAAATAAAGATAATAAAATTACTTGGGATGAGGCCAGACAATATTTCATT
ACTAGTGGTTCAAATGAAGCTCAAGCTAAAGTCTTGGCCAACTCAATGTTTGAAGATGTG
GATTCTGATGATGACAAATGTATTACACGTGAAGAACTTAGAGAATATGCCATTGAATAT
TTTGAAATTTATCCAACTGAATAATTATTTCCATAAAAATAATCTCAATTTAAGTCAGTC
TTAAAAA----------
Length of 5' end seq. 547
3' end seq. ID SLC246Z
3' end seq. 
>SLC246Z.Seq
----------GCCAAAGGTTTTCCCCGGGAGGACCTTGGGGAAATGCCCATGGAAATTTT
GGAAATTTTCCCACCGGAAAAATTTTTCCCATAAAAAAAACCCCATTTAAGGCCGGCTTT
AAAAAATTAATTAAAAAATTAAAACCTTTTTTTAATTTTTTTTAATTTTTTTTTTTTTTT
TCCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 210
Connected seq. ID SLC246P
Connected seq. 
>SLC246P.Seq
AAAAAAGAATTAAAAATGGTTACTAAAAAGGAATTTCTTGAAGAATTAACAAATGCAACA
AATGAAGCAATTAAAGCAGCTGATAAAAATGGTGATAACCAATTATCAAAGAAAGAAGTT
AATGACATGTACAAGAAATGCAAATACCCAAACCCAACTTTGGCAACCAATTCATTATTT
GAACTATTTGATCTTGACAAAGATGGAAAACTTTCGGTTAATGAAGTTAAAACTGCAGTA
CTTGTAGATTATATTATTGAAGCTGAAACTTGTTTAAAAAAATTCGTTGATATTATTTTT
AAGGCTGATTCAAATAAAGATAATAAAATTACTTGGGATGAGGCCAGACAATATTTCATT
ACTAGTGGTTCAAATGAAGCTCAAGCTAAAGTCTTGGCCAACTCAATGTTTGAAGATGTG
GATTCTGATGATGACAAATGTATTACACGTGAAGAACTTAGAGAATATGCCATTGAATAT
TTTGAAATTTATCCAACTGAATAATTATTTCCATAAAAATAATCTCAATTTAAGTCAGTC
TTAAAAA----------GCCAAAGGTTTTCCCCGGGAGGACCTTGGGGAAATGCCCATGG
AAATTTTGGAAATTTTCCCACCGGAAAAATTTTTCCCATAAAAAAAACCCCATTTAAGGC
CGGCTTTAAAAAATTAATTAAAAAATTAAAACCTTTTTTTAATTTTTTTTAATTTTTTTT
TTTTTTTTCCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 757
Full length Seq ID -
Full length Seq. -
Length of full length seq. -