SLC243 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLC243
Library	SL (Link to library)
Clone ID	SLC243 (Link to dictyBase)
Atlas ID	-
NBRP ID	G01919
dictyBase ID	DDB0204742
Link to Contig	Contig-U13931-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLC2-B/SLC243Q.Seq.d/
Representative seq. ID	SLC243P (Link to Original site)
Representative DNA sequence	>SLC243 (SLC243Q) /CSM/SL/SLC2-B/SLC243Q.Seq.d/ ATAATTTTTTTTATTGTTGATCATTTGGTATATTAAGTGTTATTGTTTATATAATATATA TTTAAGGATGAATAGAACACATCATTTATTTAGATTAAGAGGATCCTCAAGATCATTTTG TTCATCCACTCCAGTTACAAAACCAAATAAATTATTTGGTAGTTTATTTCCAAATCCAAC ACCAATAAATCCAATGAAAGAACAAATTTATTCATTTGAAGCAATTGAAAATGGAACATC ATCACCAAAGGGTACAACATTTAAAAATTCATTAGATCAACCATTTTCACAAAACGTTTT AAACAAAAGTTTTTTATACGATGAAAATGGTAAAATTACAATTGAAGAAGGTGAACAGAT GATGAAAGAATATGATGAGGACGACGATTATGGTGAATCTGTCGACGATCTCCAATCTGA AAAATTCATTAACAATATTAGAGAACAAAGTAAAAACCAATCATTTGAATTATTTCAATA TAAAAAAGAAACAAAAGCTTCAAAAGATATGGCATACATCAATTTCCTTGAAAAGCATGA ATTAAATCCAAACCTTTTATGCTTTCTAATTCAATCAGCAACATCAGAGTCTGATAAAAT TTTTGAAACCTTTAAAAAAAGTTTATCCTTTGAAATCGCTGAATCAATTTGTGTCCAAAT GCCTGATAATTCCTTAGCTGGTCGTACAGTATCAACCGCTATTTCTTTAATTCCAAAAGA AAATTCAAATATTGACCCACAATCAGTTTATAAATCACTTTCAACATTTGGTATAACCTT AAATGGTTTAAGATTAAAAGTTTTAAATGCATCAAGTTTAAAGACAATATCATTATTTGG TTTAGATAAAAATTTACCTGAGGAATATTTTAGAGATTATTTTTCAGAATCATTTGATCC AAATATGAAAGATCCAAAATTTTGTAGAATTACATTCTCATCAAAAGTTTATAAACCACA TTTGATCGGTAAAGAATCATCACACTCTGGTGTTGCACATATTACATTTGACAGTCATTT AGTTGCCATGAGAGCAATAAAAGCATTGTCCAATTTACCAATTTCTAGTTGGGTGGGTAT TAGTAGATACGCTTACACTGAAGGTTCTGXXXXXXXXXXCAACATTTGGTATAACCTTAA ATGGTTTAAGATTAAAAGTTTTAAATGCATCAAGTTTAAAGACAATATCATTATTTGGTT TAGATAAAAATTTACCTGAGGAATATTTTAGAGATTATTTTTCAGAATCATTTGATCCAA ATATGAAAGATCCAAAATTTTGTAGAATTACATTCTCATCAAAAGTTTATAAACCACATT TGATCGGTAAAGAATCATCACACTCTGGTGTTGCACATATTACATTTGACAGTCATTTAG TTGCCATGAGAGCAATAAAAGCATTGTCCAATTTACCAATTTCTAGTTGGGTGGGTATTA GTAGATACGCTTACACTGAAGGTTCTGCCGCTGCAGATTTAATCACAATTCTTGAAAGAA GGAGACATAGACAAATGGATGATATTAAATTAATGAAAGATATTATCGATTTAAAAGCAA AAGTTAAAGAGTTGGAAAATGAAGTAAAGAAACATGAAGATTCAAAGAAAAAGGGTTCAT CCAAAAGATATTTAACCAATATTTAAATAATAATAAAATAACACTTTTAACGAAAACTAA ACAA
sequence update	2002. 8. 2
Translated Amino Acid sequence	FFLLLIIWYIKCYCLYNIYLRMNRTHHLFRLRGSSRSFCSSTPVTKPNKLFGSLFPNPT PINPMKEQIYSFEAIENGTSSPKGTTFKNSLDQPFSQNVLNKSFLYDENGKITIEEGEQM MKEYDEDDDYGESVDDLQSEKFINNIREQSKNQSFELFQYKKETKASKDMAYINFLEKHE LNPNLLCFLIQSATSESDKIFETFKKSLSFEIAESICVQMPDNSLAGRTVSTAISLIPKE NSNIDPQSVYKSLSTFGITLNGLRLKVLNASSLKTISLFGLDKNLPEEYFRDYFSESFDP NMKDPKFCRITFSSKVYKPHLIGKESSHSGVAHITFDSHLVAMRAIKALSNLPISSWVGI SRYAYTEGS--- ---TFGITLNGLRLKVLNASSLKTISLFGLDKNLPEEYFRDYFSESFDPNMKDPKFCRIT FSSKVYKPHLIGKESSHSGVAHITFDSHLVAMRAIKALSNLPISSWVGISRYAYTEGSAA ADLITILERRRHRQMDDIKLMKDIIDLKAKVKELENEVKKHEDSKKKGSSKRYLTNIii ikhfrkln
Translated Amino Acid sequence (All Frames)	Frame A: iiffivdhlvyvllfiyifkdentsfiikrilkiilfihssyktkiiwfisksn tnksnertnlfisnkwniitkgynikfirstiftkrfkqkffirkwnynrrtd derigrrlwicrrspikihqyrtkkpiiiisikrnksfkrygihqfpka ikskpfmlsnsisnirv*nfnlkkfilnrinlcpnaflswsysinryffnskr kfkyptislitfniwynlkwfkiksfkcikfkdniiiwfrkftgifrlffriis kyerskilnyilikslttfdrriitlwcctyyiqsfschesnksivqftnflggy *irlhrf--- ---qhlvpmvdkfmhqvrqyhylvikiylrnileiifqnhliqikiqnfvel hshqkfinhisvknhhtlvlhilhltvilpeqkhcpiyqflvgwvlvdtltlkvlp lqisqflkegdidkwmilnkilsikqklkswkmkrnmkiqrkrvhpkdipifk* *nntfnent Frame B: FFLLLIIWYIKCYCLYNIYLRMNRTHHLFRLRGSSRSFCSSTPVTKPNKLFGSLFPNPT PINPMKEQIYSFEAIENGTSSPKGTTFKNSLDQPFSQNVLNKSFLYDENGKITIEEGEQM MKEYDEDDDYGESVDDLQSEKFINNIREQSKNQSFELFQYKKETKASKDMAYINFLEKHE LNPNLLCFLIQSATSESDKIFETFKKSLSFEIAESICVQMPDNSLAGRTVSTAISLIPKE NSNIDPQSVYKSLSTFGITLNGLRLKVLNASSLKTISLFGLDKNLPEEYFRDYFSESFDP NMKDPKFCRITFSSKVYKPHLIGKESSHSGVAHITFDSHLVAMRAIKALSNLPISSWVGI SRYAYTEGS--- ---niwynlkwfkiksfkcikfkdniiiwfrkftgifrlffriiskyerskilny ilikslttfdrriitlwcctyyiqsfschesnksivqftnflggy*irlhrfcr crfnhnskkettngyineryyrfksksrvgksketrfkekgfiqkifnqylnn nkitlltktkq Frame C: nffycsfgilsvivyiiyigiehiiyldedpqdhfvhplqlqnqinylvvyfqiqh qiqknkfihlkqlkmehhhqrvqhlkihinhfhktftkvfytmkmvklqlkkvnr knmmrttimvnlstisnlknsltilenkvktnhlnyfnikkkqklqkiwhtsislksmn iqtfyaffnqqhqslikflkplkkvyplkslnqfvskcliiplvvqyqplflfqkk iqilthnqfinhfqhlvpmvdkfmhqvrqyhylvikiylrnileiifqnhliq ikiqnfvelhshqkfinhisvknhhtlvlhilhltvilpeqkhcpiyqflvgwvl vdtltlkvl--- ---TFGITLNGLRLKVLNASSLKTISLFGLDKNLPEEYFRDYFSESFDPNMKDPKFCRIT FSSKVYKPHLIGKESSHSGVAHITFDSHLVAMRAIKALSNLPISSWVGISRYAYTEGSAA ADLITILERRRHRQMDDIKLMKDIIDLKAKVKELENEVKKHEDSKKKGSSKRYLTNIii ikhfrkln
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLC243 (SLC243Q) /CSM/SL/SLC2-B/SLC243Q.Seq.d/ 3213 0.0 AFG653 (AFG653Q) /CSM/AF/AFG6-C/AFG653Q.Seq.d/ 1178 0.0 AFL266 (AFL266Q) /CSM/AF/AFL2-C/AFL266Q.Seq.d/ 1061 0.0 AFI693 (AFI693Q) /CSM/AF/AFI6-D/AFI693Q.Seq.d/ 1041 0.0 AFI152 (AFI152Q) /CSM/AF/AFI1-C/AFI152Q.Seq.d/ 900 0.0 VSJ790 (VSJ790Q) /CSM/VS/VSJ7-D/VSJ790Q.Seq.d/ 48 4e-04 VFK322 (VFK322Q) /CSM/VF/VFK3-A/VFK322Q.Seq.d/ 44 0.007 VHQ310 (VHQ310Q) /CSM/VH/VHQ3-A/VHQ310Q.Seq.d/ 42 0.027 SFL321 (SFL321Q) /CSM/SF/SFL3-A/SFL321Q.Seq.d/ 42 0.027 VSH792 (VSH792Q) /CSM/VS/VSH7-D/VSH792Q.Seq.d/ 40 0.11
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 7e-14 23 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 42 3e-10 28 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 32 6e-10 27 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 38 1e-09 19 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 2e-09 20 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 3e-09 24 AL844505\|AL844505.1 Plasmodium falciparum chromosome 6. 38 3e-09 19 AE014847\|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 34 7e-09 20 AF063866\|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 44 7e-09 21 AB063522\|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 34 1e-08 22
dna update	2003.11.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value FM204883_868(FM204883\|pid:none) Streptococcus equi subsp. equi 4... 37 2.7 CT573073_474(CT573073\|pid:none) Kuenenia stuttgartiensis genome ... 36 3.6 BC139502_1(BC139502\|pid:none) Danio rerio sb:cb37, mRNA (cDNA cl... 36 3.6 AE017226_883(AE017226\|pid:none) Treponema denticola ATCC 35405, ... 36 4.6 AF022980_11(AF022980\|pid:none) Caenorhabditis elegans cosmid T03... 35 7.9 CP001357_949(CP001357\|pid:none) Brachyspira hyodysenteriae WA1, ... 35 7.9
protein update	2009. 6. 1
PSORT	psg: 0.79 gvh: 0.67 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.52 mip: 0.07 nuc: 0.05 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: mitochondrial 32.0 %: nuclear 8.0 %: cytoplasmic 4.0 %: extracellular, including cell wall >> prediction for SLC243 is mit
5' end seq. ID	SLC243F
5' end seq.	>SLC243F.Seq ATAATTTTTTTTATTGTTGATCATTTGGTATATTAAGTGTTATTGTTTATATAATATATA TTTAAGGATGAATAGAACACATCATTTATTTAGATTAAGAGGATCCTCAAGATCATTTTG TTCATCCACTCCAGTTACAAAACCAAATAAATTATTTGGTAGTTTATTTCCAAATCCAAC ACCAATAAATCCAATGAAAGAACAAATTTATTCATTTGAAGCAATTGAAAATGGAACATC ATCACCAAAGGGTACAACATTTAAAAATTCATTAGATCAACCATTTTCACAAAACGTTTT AAACAAAAGTTTTTTATACGATGAAAATGGTAAAATTACAATTGAAGAAGGTGAACAGAT GATGAAAGAATATGATGAGGACGACGATTATGGTGAATCTGTCGACGATCTCCAATCTGA AAAATTCATTAACAATATTAGAGAACAAAGTAAAAACCAATCATTTGAATTATTTCAATA TAAAAAAGAAACAAAAGCTTCAAAAGATATGGCATACATCAATTTCCTTGAAAAGCATGA ATTAAATCCAAACCTTTTATGCTTTCTAATTCAATCAGCAACATCAGAGTCTGATAAAAT TTTTGAAACCTTTAAAAAAAGTTTATCCTTTGAAATCGCTGAATCAATTTGTGTCCAAAT GCCTGATAATTCCTTAGCTGGTCGTACAGTATCAACCGCTATTTCTTTAATTCCAAAAGA AAATTCAAATATTGACCCACAATCAGTTTATAAATCACTTTCAACATTTGGTATAACCTT AAATGGTTTAAGATTAAAAGTTTTAAATGCATCAAGTTTAAAGACAATATCATTATTTGG TTTAGATAAAAATTTACCTGAGGAATATTTTAGAGATTATTTTTCAGAATCATTTGATCC AAATATGAAAGATCCAAAATTTTGTAGAATTACATTCTCATCAAAAGTTTATAAACCACA TTTGATCGGTAAAGAATCATCACACTCTGGTGTTGCACATATTACATTTGACAGTCATTT AGTTGCCATGAGAGCAATAAAAGCATTGTCCAATTTACCAATTTCTAGTTGGGTGGGTAT TAGTAGATACGCTTACACTGAAGGTTCTGNNNNNNNNNN
Length of 5' end seq.	1119
3' end seq. ID	SLC243Z
3' end seq.	>SLC243Z.Seq ----------CAACATTTGGTATAACCTTAAATGGTTTAAGATTAAAAGTTTTAAATGCA TCAAGTTTAAAGACAATATCATTATTTGGTTTAGATAAAAATTTACCTGAGGAATATTTT AGAGATTATTTTTCAGAATCATTTGATCCAAATATGAAAGATCCAAAATTTTGTAGAATT ACATTCTCATCAAAAGTTTATAAACCACATTTGATCGGTAAAGAATCATCACACTCTGGT GTTGCACATATTACATTTGACAGTCATTTAGTTGCCATGAGAGCAATAAAAGCATTGTCC AATTTACCAATTTCTAGTTGGGTGGGTATTAGTAGATACGCTTACACTGAAGGTTCTGCC GCTGCAGATTTAATCACAATTCTTGAAAGAAGGAGACATAGACAAATGGATGATATTAAA TTAATGAAAGATATTATCGATTTAAAAGCAAAAGTTAAAGAGTTGGAAAATGAAGTAAAG AAACATGAAGATTCAAAGAAAAAGGGTTCATCCAAAAGATATTTAACCAATATTTAAATA ATAATAAAATAACACTTTTAACGAAAACTAAACAA
Length of 3' end seq.	565
Connected seq. ID	SLC243P
Connected seq.	>SLC243P.Seq ATAATTTTTTTTATTGTTGATCATTTGGTATATTAAGTGTTATTGTTTATATAATATATA TTTAAGGATGAATAGAACACATCATTTATTTAGATTAAGAGGATCCTCAAGATCATTTTG TTCATCCACTCCAGTTACAAAACCAAATAAATTATTTGGTAGTTTATTTCCAAATCCAAC ACCAATAAATCCAATGAAAGAACAAATTTATTCATTTGAAGCAATTGAAAATGGAACATC ATCACCAAAGGGTACAACATTTAAAAATTCATTAGATCAACCATTTTCACAAAACGTTTT AAACAAAAGTTTTTTATACGATGAAAATGGTAAAATTACAATTGAAGAAGGTGAACAGAT GATGAAAGAATATGATGAGGACGACGATTATGGTGAATCTGTCGACGATCTCCAATCTGA AAAATTCATTAACAATATTAGAGAACAAAGTAAAAACCAATCATTTGAATTATTTCAATA TAAAAAAGAAACAAAAGCTTCAAAAGATATGGCATACATCAATTTCCTTGAAAAGCATGA ATTAAATCCAAACCTTTTATGCTTTCTAATTCAATCAGCAACATCAGAGTCTGATAAAAT TTTTGAAACCTTTAAAAAAAGTTTATCCTTTGAAATCGCTGAATCAATTTGTGTCCAAAT GCCTGATAATTCCTTAGCTGGTCGTACAGTATCAACCGCTATTTCTTTAATTCCAAAAGA AAATTCAAATATTGACCCACAATCAGTTTATAAATCACTTTCAACATTTGGTATAACCTT AAATGGTTTAAGATTAAAAGTTTTAAATGCATCAAGTTTAAAGACAATATCATTATTTGG TTTAGATAAAAATTTACCTGAGGAATATTTTAGAGATTATTTTTCAGAATCATTTGATCC AAATATGAAAGATCCAAAATTTTGTAGAATTACATTCTCATCAAAAGTTTATAAACCACA TTTGATCGGTAAAGAATCATCACACTCTGGTGTTGCACATATTACATTTGACAGTCATTT AGTTGCCATGAGAGCAATAAAAGCATTGTCCAATTTACCAATTTCTAGTTGGGTGGGTAT TAGTAGATACGCTTACACTGAAGGTTCTG----------CAACATTTGGTATAACCTTAA ATGGTTTAAGATTAAAAGTTTTAAATGCATCAAGTTTAAAGACAATATCATTATTTGGTT TAGATAAAAATTTACCTGAGGAATATTTTAGAGATTATTTTTCAGAATCATTTGATCCAA ATATGAAAGATCCAAAATTTTGTAGAATTACATTCTCATCAAAAGTTTATAAACCACATT TGATCGGTAAAGAATCATCACACTCTGGTGTTGCACATATTACATTTGACAGTCATTTAG TTGCCATGAGAGCAATAAAAGCATTGTCCAATTTACCAATTTCTAGTTGGGTGGGTATTA GTAGATACGCTTACACTGAAGGTTCTGCCGCTGCAGATTTAATCACAATTCTTGAAAGAA GGAGACATAGACAAATGGATGATATTAAATTAATGAAAGATATTATCGATTTAAAAGCAA AAGTTAAAGAGTTGGAAAATGAAGTAAAGAAACATGAAGATTCAAAGAAAAAGGGTTCAT CCAAAAGATATTTAACCAATATTTAAATAATAATAAAATAACACTTTTAACGAAAACTAA ACAA
Length of connected seq.	1674
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas