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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC242
Library SL
(Link to library)
Clone ID SLC242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12013-1
Original site URL
Representative seq. ID SLC242E
(Link to Original site)
Representative DNA sequence 
>SLC242 (SLC242Q) /CSM/SL/SLC2-B/SLC242Q.Seq.d/
AATTTATCAACATCAACTACTACAACTACCACAACAACTACAACTACAACAGCAGCAGCA
AATGAAAATACAAATACAACACAAGAACAAACTGTATCACCAAATAAACCACCACAACCA
CCAAATGCATTATCACAATCAACAACATCATCATCAACATCATCAACATCATTATTAAGT
AGTACATTTTCTAAATTTAAAATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCA
TCATCAGCACCAGGAACACCACATATAAATAATAATAATAATACTGTATCATCATCAAAT
AAAAATAGATCAACCCTAGTTATAACACCAGGATCTGTAAATAATAATAATAACAACCAA
AACAATCATAAAAATAATAATACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTT
GAAAAGGAAGTGATTACAATTGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTA
ATAAGAATATCTGGAATTCCAGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATAC
GTTTTACATTTTAGAACGGGTAGATTCTTTAAATTGGTTGACGAACCACCAAGAGAACCC
AGAAAGAAATTTGTATCTGAAAGATTTAATGATGGTGAAAAGTTACTTGAACCTGTTGAA
CCAGCTTTACTAAAGAAAATGTATAAAGATTCTGATCAAGTTGGTAAAGGTGGTTTTGGT
ACAGTTTATTTTGCAAAAAGTACAAAAAAAA
sequence update 1999. 7.13
Translated Amino Acid sequence 
NLSTSTTTTTTTTTTTTAAANENTNTTQEQTVSPNKPPQPPNALSQSTTSSSTSSTSLLS
STFSKFKIKLGSGSTKNKDSSSAPGTPHINNNNNTVSSSNKNRSTLVITPGSVNNNNNNQ
NNHKNNNTTPDHPPEEQKPVEKEVITIATLADFPEDCQKLIRISGIPEEKLIKNIQILAY
VLHFRTGRFFKLVDEPPREPRKKFVSERFNDGEKLLEPVEPALLKKMYKDSDQVGKGGFG
TVYFAKSTKK
Translated Amino Acid sequence (All Frames) 
Frame A:
NLSTSTTTTTTTTTTTTAAANENTNTTQEQTVSPNKPPQPPNALSQSTTSSSTSSTSLLS
STFSKFKIKLGSGSTKNKDSSSAPGTPHINNNNNTVSSSNKNRSTLVITPGSVNNNNNNQ
NNHKNNNTTPDHPPEEQKPVEKEVITIATLADFPEDCQKLIRISGIPEEKLIKNIQILAY
VLHFRTGRFFKLVDEPPREPRKKFVSERFNDGEKLLEPVEPALLKKMYKDSDQVGKGGFG
TVYFAKSTKK


Frame B:
iyqhqllqlpqqlqlqqqqqmkiqiqhknklyhqinhhnhqmhyhnqqhhhqhhqhhy*v
vhflnlklnlvavqqrikihhqhqehhi*iiiiilyhhqikidqp*l*hqdl*iiiittk
tiikiiiqhqitlqknknqlkrk*lqlqhwqislkivks**eylefqkrn*lkifkf*ht
fyilervdslnwltnhqenpernlylkdlmmvksylnllnqly*rkcikiliklvkvvlv
qfilqkvqkk


Frame C:
fininyynyhnnynynsssk*kykyntrtncitk*tttttkciitinniiiniiniiik*
yif*i*n*tw*rfnke*rfiistrnttyk****yciiik*k*inpsyntrick****qpk
qs*k**yntrspsrrtkts*kgsdyncnigrfp*rlskvnkniwnsrrein*kysnfsir
ftf*ng*il*ig*rttkrtqkeici*ki**w*kvt*tc*tsftkenv*rf*ssw*rwfwy
slfckkykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC242 (SLC242Q) /CSM/SL/SLC2-B/SLC242Q.Seq.d/                        912   0.0
CHD779 (CHD779Q) /CSM/CH/CHD7-D/CHD779Q.Seq.d/                        870   0.0
CFG474 (CFG474Q) /CSM/CF/CFG4-D/CFG474Q.Seq.d/                        825   0.0
CHB423 (CHB423Q) /CSM/CH/CHB4-A/CHB423Q.Seq.d/                        753   0.0
SFC655 (SFC655Q) /CSM/SF/SFC6-C/SFC655Q.Seq.d/                        617   e-175
CFB532 (CFB532Q) /CSM/CF/CFB5-B/CFB532Q.Seq.d/                        521   e-147
SLG413 (SLG413Q) /CSM/SL/SLG4-A/SLG413Q.Seq.d/                        178   8e-44
CHS267 (CHS267Q) /CSM/CH/CHS2-C/CHS267Q.Seq.d/                        165   1e-39
SLB461 (SLB461Q) /CSM/SL/SLB4-C/SLB461Q.Seq.d/                         54   3e-06
CHK633 (CHK633Q) /CSM/CH/CHK6-B/CHK633Q.Seq.d/                         54   3e-06
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF238312) Dictyostelium discoideum putative serine-threonin...   640   0.0    5
(AU034193) Dictyostelium discoideum slug cDNA, clone SLC242.      706   0.0    3
(BJ364093) Dictyostelium discoideum cDNA clone:ddc29n19, 5' ...   664   0.0    3
(BJ359297) Dictyostelium discoideum cDNA clone:ddc13d20, 5' ...   618   0.0    3
(BJ362933) Dictyostelium discoideum cDNA clone:ddc24n06, 5' ...   706   0.0    1
(AU060920) Dictyostelium discoideum slug cDNA, clone SLC242.      391   0.0    4
(BJ360126) Dictyostelium discoideum cDNA clone:ddc4o07, 5' e...   315   e-169  4
(BJ388661) Dictyostelium discoideum cDNA clone:dds6m14, 5' e...   410   e-163  3
(BJ386530) Dictyostelium discoideum cDNA clone:ddc58e18, 3' ...   165   9e-71  3
(AU061871) Dictyostelium discoideum slug cDNA, clone SLG413.      178   4e-56  2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP005313_21(AP005313|pid:none) Oryza sativa Japonica Group genom...    35   2.5
(Q7ZUS1) RecName: Full=Serine/threonine-protein kinase VRK1;    ...    35   3.3
(Q6BIV1) RecName: Full=IMP-specific 5'-nucleotidase 1;          ...    34   4.3
CP000285_2637(CP000285|pid:none) Chromohalobacter salexigens DSM...    33   9.7
CP000480_5267(CP000480|pid:none) Mycobacterium smegmatis str. MC...    33   9.7
protein update 2009. 3. 3
PSORT 

 psg: 0.87  gvh: 0.49  alm: 0.46  top: 0.40  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SLC242 is mit
5' end seq. ID SLC242F
5' end seq. 
>SLC242F.Seq
AATTTATCAACATCAACTACTACAACTACCACAACAACTACAACTACAACAGCAGCAGCA
AATGAAAATACAAATACAACACAAGAACAAACTGTATCACCAAATAAACCACCACAACCA
CCAAATGCATTATCACAATCAACAACATCATCATCAACATCATCAACATCATTATTAAGT
AGTACATTTTCTAAATTTAAAATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCA
TCATCAGCACCAGGAACACCACATATAAATAATAATAATAATACTGTATCATCATCAAAT
AAAAATAGATCAACCCTAGTTATAACACCAGGATCTGTAAATAATAATAATAACAACCAA
AACAATCATAAAAATAATAATACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTT
GAAAAGGAAGTGATTACAATTGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTA
ATAAGAATATCTGGAATTCCAGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATAC
GTTTTACATTTTAGAACGGGTAGATTCTTTAAATTGGTTGACGACCACCAAGAGA-----
-----
Length of 5' end seq. 595
3' end seq. ID SLC242Z
3' end seq. 
>SLC242Z.Seq
----------CATCATCATCAACATCATCAACATCATTATTAAGTAGTACATTTTCTAAA
TTTAAAATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCATCATCAGCACCAGGA
ACACCACATATAAATAATAATAATAATACTGTATCATCATCAAATAAAAATAGATCAACC
CTAGTTATAACACCAGGATCTGTAAATAATAATAATAACAACCAAAACAATCATAAAAAT
AATAATACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTTGAAAAGGAAGTGATT
ACAATTGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTAATAAGAATATCTGGA
ATTCCAGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATACGTTTTACATTTTAGA
ACGGGTAGATTCTTTAAATTGGTTGACGAACCACCAAGAGAACCCAGAAAGAAATTTGTA
TCTGAAAGATTTAATGATGGTGAAAAGTTACTTGAACCTGTTGAACCAGCTTTACTAAAG
AAAATGTATAAAGATTCTGATCAAGTTGGTAAAGGTGGTTTTGGTACAGTTTATTTTGCA
AAAAGTACAAAAAAAA
Length of 3' end seq. 606
Connected seq. ID SLC242P
Connected seq. 
>SLC242P.Seq
AATTTATCAACATCAACTACTACAACTACCACAACAACTACAACTACAACAGCAGCAGCA
AATGAAAATACAAATACAACACAAGAACAAACTGTATCACCAAATAAACCACCACAACCA
CCAAATGCATTATCACAATCAACAACATCATCATCAACATCATCAACATCATTATTAAGT
AGTACATTTTCTAAATTTAAAATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCA
TCATCAGCACCAGGAACACCACATATAAATAATAATAATAATACTGTATCATCATCAAAT
AAAAATAGATCAACCCTAGTTATAACACCAGGATCTGTAAATAATAATAATAACAACCAA
AACAATCATAAAAATAATAATACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTT
GAAAAGGAAGTGATTACAATTGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTA
ATAAGAATATCTGGAATTCCAGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATAC
GTTTTACATTTTAGAACGGGTAGATTCTTTAAATTGGTTGACGACCACCAAGAGA-----
-----CATCATCATCAACATCATCAACATCATTATTAAGTAGTACATTTTCTAAATTTAA
AATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCATCATCAGCACCAGGAACACC
ACATATAAATAATAATAATAATACTGTATCATCATCAAATAAAAATAGATCAACCCTAGT
TATAACACCAGGATCTGTAAATAATAATAATAACAACCAAAACAATCATAAAAATAATAA
TACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTTGAAAAGGAAGTGATTACAAT
TGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTAATAAGAATATCTGGAATTCC
AGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATACGTTTTACATTTTAGAACGGG
TAGATTCTTTAAATTGGTTGACGAACCACCAAGAGAACCCAGAAAGAAATTTGTATCTGA
AAGATTTAATGATGGTGAAAAGTTACTTGAACCTGTTGAACCAGCTTTACTAAAGAAAAT
GTATAAAGATTCTGATCAAGTTGGTAAAGGTGGTTTTGGTACAGTTTATTTTGCAAAAAG
TACAAAAAAAA
Length of connected seq. 1201
Full length Seq ID SLC242E
Full length Seq. 
>SLC242E.Seq
AATTTATCAACATCAACTACTACAACTACCACAACAACTACAACTACAACAGCAGCAGCA
AATGAAAATACAAATACAACACAAGAACAAACTGTATCACCAAATAAACCACCACAACCA
CCAAATGCATTATCACAATCAACAACATCATCATCAACATCATCAACATCATTATTAAGT
AGTACATTTTCTAAATTTAAAATTAAACTTGGTAGCGGTTCAACAAAGAATAAAGATTCA
TCATCAGCACCAGGAACACCACATATAAATAATAATAATAATACTGTATCATCATCAAAT
AAAAATAGATCAACCCTAGTTATAACACCAGGATCTGTAAATAATAATAATAACAACCAA
AACAATCATAAAAATAATAATACAACACCAGATCACCCTCCAGAAGAACAAAAACCAGTT
GAAAAGGAAGTGATTACAATTGCAACATTGGCAGATTTCCCTGAAGATTGTCAAAAGTTA
ATAAGAATATCTGGAATTCCAGAAGAGAAATTAATTAAAAATATTCAAATTTTAGCATAC
GTTTTACATTTTAGAACGGGTAGATTCTTTAAATTGGTTGACGAACCACCAAGAGAACCC
AGAAAGAAATTTGTATCTGAAAGATTTAATGATGGTGAAAAGTTACTTGAACCTGTTGAA
CCAGCTTTACTAAAGAAAATGTATAAAGATTCTGATCAAGTTGGTAAAGGTGGTTTTGGT
ACAGTTTATTTTGCAAAAAGTACAAAAAAAA
Length of full length seq. 751