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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC241
Library SL
(Link to library)
Clone ID SLC241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16252-1
Original site URL
Representative seq. ID SLC241Z
(Link to Original site)
Representative DNA sequence 
>SLC241 (SLC241Q) /CSM/SL/SLC2-B/SLC241Q.Seq.d/
XXXXXXXXXXCAAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACG
GTTCAGCTGTTATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAAT
ATCCAATCATTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAAT
TAACAGCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAA
GAATTAAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAA
TTGGTTCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTG
TCATGGTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTG
GTTTAGGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAAT
ACAATCAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAA
CTTTCCGTAAATTTTAATTTTACTCATAATATGTGAAACAAAACTAAAAAAAAAAAAAAG
AATAAAAAAAATAAAAAAAATA
sequence update 1998. 4.24
Translated Amino Acid sequence 
---KVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKL
TASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGV
MVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLT
FRKF*fys*yvkqn*kkkke*kk*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---KVENGYDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKL
TASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGV
MVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLT
FRKF*fys*yvkqn*kkkke*kk*kk


Frame B:
---klkmvtiltsklktmtvqllslvkn*vistenslkniqsfqlkihlikmignhtln*
qhqlifkllvmiyllptqkelrlvlkrkhvmlfy*kltklvqslnqfvplltqrmhhgvs
wlaivqvklkipslli*llv*vlvklklvlhvdqkd*pntinlleltks*vktitmlv*l
svnfnfthnm*nktkkkkknkknkkn


Frame C:
---s*kwlrs*lqn*kq*rfscylw*kir*slqrih*risnhfn*rsi*sr*lgiih*in
sis*ysncw**ftcyqprkn*dwy*kesm*csfiks*pnwfsh*inscrs*lkecimgch
g*psfr*n*rylhc*fscwfrywsn*nwcsm*irkisqiqstc*n*rrvr*kp*lcwfnf
p*ililliicetklkkkkrikkikki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI448 (SSI448Q) /CSM/SS/SSI4-B/SSI448Q.Seq.d/                       1140   0.0
SLE731 (SLE731Q) /CSM/SL/SLE7-B/SLE731Q.Seq.d/                       1140   0.0
SLC241 (SLC241Q) /CSM/SL/SLC2-B/SLC241Q.Seq.d/                       1140   0.0
SLA770 (SLA770Q) /CSM/SL/SLA7-C/SLA770Q.Seq.d/                       1140   0.0
VFL491 (VFL491Q) /CSM/VF/VFL4-D/VFL491Q.Seq.d/                       1116   0.0
VFE233 (VFE233Q) /CSM/VF/VFE2-B/VFE233Q.Seq.d/                       1116   0.0
SFE744 (SFE744Q) /CSM/SF/SFE7-B/SFE744Q.Seq.d/                       1116   0.0
SFC432 (SFC432Q) /CSM/SF/SFC4-B/SFC432Q.Seq.d/                       1116   0.0
SFC169 (SFC169Q) /CSM/SF/SFC1-C/SFC169Q.Seq.d/                       1116   0.0
CHC115 (CHC115Q) /CSM/CH/CHC1-A/CHC115Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039547) Dictyostelium discoideum slug cDNA, clone SLE731.     1128   0.0    1
(AU039515) Dictyostelium discoideum slug cDNA, clone SLA770.     1128   0.0    1
(AU034192) Dictyostelium discoideum slug cDNA, clone SLC241.     1128   0.0    1
(C90241) Dictyostelium discoideum slug cDNA, clone SSI448.       1128   0.0    1
(BJ434074) Dictyostelium discoideum cDNA clone:ddv23f24, 3' ...  1116   0.0    1
(BJ430908) Dictyostelium discoideum cDNA clone:ddv9a10, 3' e...  1116   0.0    1
(BJ399358) Dictyostelium discoideum cDNA clone:dds5i17, 3' e...  1116   0.0    1
(BJ399326) Dictyostelium discoideum cDNA clone:dds5p08, 3' e...  1116   0.0    1
(BJ397950) Dictyostelium discoideum cDNA clone:dds10h11, 3' ...  1116   0.0    1
(BJ377849) Dictyostelium discoideum cDNA clone:ddc26m03, 3' ...  1116   0.0    1
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RK5) RecName: Full=Enolase A;          EC=4.2.1.11; AltName:...   363   2e-99
AF100985_1(AF100985|pid:none) Penaeus monodon phosphopyruvate hy...   271   8e-72
EF137905_1(EF137905|pid:none) Helianthus annuus plastid enolase ...   270   2e-71
(P26300) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   264   1e-69
AC016662_10(AC016662|pid:none) Arabidopsis thaliana chromosome 1...   264   2e-69
T12341(T12341) phosphopyruvate hydratase (EC 4.2.1.11) - common ...   264   2e-69
(Q43130) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   263   3e-69
EU964132_1(EU964132|pid:none) Zea mays clone 276124 enolase mRNA...   262   5e-69
EF148215_1(EF148215|pid:none) Populus trichocarpa clone WS0128_M...   262   6e-69
(P42896) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   262   6e-69
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.11  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLC241 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC241Z
3' end seq. 
>SLC241Z.Seq
----------CAAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACG
GTTCAGCTGTTATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAAT
ATCCAATCATTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAAT
TAACAGCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAA
GAATTAAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAA
TTGGTTCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTG
TCATGGTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTG
GTTTAGGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAAT
ACAATCAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAA
CTTTCCGTAAATTTTAATTTTACTCATAATATGTGAAACAAAACTAAAAAAAAAAAAAAG
AATAAAAAAAATAAAAAAAATA
Length of 3' end seq. 612
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -