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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC240
Library SL
(Link to library)
Clone ID SLC240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16365-1
Original site URL
Representative seq. ID SLC240Z
(Link to Original site)
Representative DNA sequence 
>SLC240 (SLC240Q) /CSM/SL/SLC2-B/SLC240Q.Seq.d/
XXXXXXXXXXATGCCGCTTCATCAATTGCCTCTGTTGCAAATTCAGTCTCATCAATGACC
AATTCAGTTTCATCATTAGCTAACTCAGTTTCATCATTAGCTGGTTCATCATCATCATCA
GGTTCATCAGGTTCATCATCATCATCATCATCATCAGGTTCATCAGGTGGTTCATCAGGT
GGTTCATCAGGTGGCGGTGGTGGTTCAGGTGAATTATTATCACAAAACCAAGTTTTCGCT
ACTTGTGTTAGAGTTATTTCAACCAATGTTGGACCAAATGTTGATATTGAAGATAAAATT
GGTAAACCAATTATGGATGCATCAACAAAAGTTTGCGAGGATCTCTTTGGATCACCATAT
TGTCAATGGACCGATAACCATATTGTTACTGCTGTTTCAAGCAAATTAGATGATGGTTTC
CCAACTCAAGGTGCATTCAATGTTACTCGTTCTCAATACGGTTACATCATGGAAAATGGC
CATTATTTAAATAATAAAGGAAACTCTGTTAGAATTAATTAAATAAATAATATATTAAAC
TACGAATATA
sequence update 1998. 4.24
Translated Amino Acid sequence 
---AASSIASVANSVSSMTNSVSSLANSVSSLAGSSSSSGSSGSSSSSSSSGSSGGSSGG
SSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVCEDLFGSPYC
QWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRIN*innilny
ey
Translated Amino Acid sequence (All Frames) 
Frame A:
---crfinclcckfslindqfsfiis*lsfiiswfiiiirfirfiiiiiiirfirwfirw
firwrwwfr*iiitkpsfrylc*syfnqcwtkc*y*r*nw*tnygcinkslrgslwitil
smdr*pycyccfkqir*wfpnsrciqcysfsirlhhgkwplfk**rklc*n*lnk*yikl
ri


Frame B:
---AASSIASVANSVSSMTNSVSSLANSVSSLAGSSSSSGSSGSSSSSSSSGSSGGSSGG
SSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVCEDLFGSPYC
QWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRIN*innilny
ey


Frame C:
---plhqlpllqiqshq*piqfhh*ltqfhh*lvhhhhqvhqvhhhhhhhqvhqvvhqvv
hqvavvvqvnyyhktkfsllvlelfqpmldqmlilkiklvnqlwmhqqkfarisldhhiv
ngpitillllfqan*mmvsqlkvhsmllvlntvtswkmaii*iiketllelik*iiy*tt
ni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC240 (SLC240Q) /CSM/SL/SLC2-B/SLC240Q.Seq.d/                        710   0.0
SLF140 (SLF140Q) /CSM/SL/SLF1-B/SLF140Q.Seq.d/                        702   0.0
SLC232 (SLC232Q) /CSM/SL/SLC2-B/SLC232Q.Seq.d/                        702   0.0
SLA329 (SLA329Q) /CSM/SL/SLA3-B/SLA329Q.Seq.d/                        684   0.0
VFL554 (VFL554Q) /CSM/VF/VFL5-C/VFL554Q.Seq.d/                        626   e-179
CHA351 (CHA351Q) /CSM/CH/CHA3-C/CHA351Q.Seq.d/                        589   e-167
SFC859 (SFC859Q) /CSM/SF/SFC8-C/SFC859Q.Seq.d/                        575   e-163
SLG763 (SLG763Q) /CSM/SL/SLG7-C/SLG763Q.Seq.d/                        553   e-156
FC-AB29 (FC-AB29Q) /CSM/FC/FC-AB/FC-AB29Q.Seq.d/                      549   e-155
VHQ412 (VHQ412Q) /CSM/VH/VHQ4-A/VHQ412Q.Seq.d/                        521   e-147
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034191) Dictyostelium discoideum slug cDNA, clone SLC240.      672   0.0    2
(AU052810) Dictyostelium discoideum slug cDNA, clone SLF140.      664   0.0    2
(AU034184) Dictyostelium discoideum slug cDNA, clone SLC232.      664   0.0    2
(AU284237) Dictyostelium discoideum gamete cDNA clone:FC-AB2...   549   0.0    3
(AU040055) Dictyostelium discoideum slug cDNA, clone SLA329.      662   0.0    1
(BJ377085) Dictyostelium discoideum cDNA clone:ddc22f13, 3' ...   511   e-170  4
(BJ399576) Dictyostelium discoideum cDNA clone:dds6f16, 3' e...   511   e-166  3
(BJ434675) Dictyostelium discoideum cDNA clone:ddv24k13, 3' ...   589   e-164  1
(AU039925) Dictyostelium discoideum slug cDNA, clone SLG763.      553   e-153  1
(BJ446558) Dictyostelium discoideum cDNA clone:ddv63h04, 3' ...   464   e-148  3
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M35) RecName: Full=Putative lysozyme-like protein; Flags: Pr...   212   4e-54
(Q8T1G4) RecName: Full=Lysozyme A;          EC=3.2.1.n1; AltName...    54   3e-06
DQ191207_1(DQ191207|pid:none) Sus scrofa coreanus isolate S6 mel...    34   2.1
BT066311_1(BT066311|pid:none) Drosophila melanogaster MIP05930 f...    33   4.8
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.65  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLC240 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC240Z
3' end seq. 
>SLC240Z.Seq
----------ATGCCGCTTCATCAATTGCCTCTGTTGCAAATTCAGTCTCATCAATGACC
AATTCAGTTTCATCATTAGCTAACTCAGTTTCATCATTAGCTGGTTCATCATCATCATCA
GGTTCATCAGGTTCATCATCATCATCATCATCATCAGGTTCATCAGGTGGTTCATCAGGT
GGTTCATCAGGTGGCGGTGGTGGTTCAGGTGAATTATTATCACAAAACCAAGTTTTCGCT
ACTTGTGTTAGAGTTATTTCAACCAATGTTGGACCAAATGTTGATATTGAAGATAAAATT
GGTAAACCAATTATGGATGCATCAACAAAAGTTTGCGAGGATCTCTTTGGATCACCATAT
TGTCAATGGACCGATAACCATATTGTTACTGCTGTTTCAAGCAAATTAGATGATGGTTTC
CCAACTCAAGGTGCATTCAATGTTACTCGTTCTCAATACGGTTACATCATGGAAAATGGC
CATTATTTAAATAATAAAGGAAACTCTGTTAGAATTAATTAAATAAATAATATATTAAAC
TACGAATATA
Length of 3' end seq. 540
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -