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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC239
Library SL
(Link to library)
Clone ID SLC239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLC239Z
(Link to Original site)
Representative DNA sequence 
>SLC239 (SLC239Q) /CSM/SL/SLC2-B/SLC239Q.Seq.d/
XXXXXXXXXXACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCT
CTGATTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTA
TGCAAATCTTTGTAAAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTG
ATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC
AAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATA
TTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTG
TTAAAACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAA
ATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTT
TCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAAT
CCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTAACTAAGTTTTGGTGCCAGAGTGAA
TAATAAAT
sequence update 1998. 4.24
Translated Amino Acid sequence 
---QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSD
NIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFV
KTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
TLHLVLRLRGGN*vlvpe*iin
Translated Amino Acid sequence (All Frames) 
Frame A:
---QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSD
NIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFV
KTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
TLHLVLRLRGGN*vlvpe*iin


Frame B:
---nvsfslvnn*kmavlslittskknplsi*fsd*evvcksl*kp*lvrpshwkskvli
tlkmskpkfktkkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*evvcksll
kl*qvklspwkskvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlslittfkrnp
lsi*fsd*evvtkfwcqse**


Frame C:
---tshfrw*tirrwpysl*lqhpkrihspfssqikrwyanlcknldw*dhhigsrrf**
h*kcqsqnsrqrrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*
nfnr*nyhlgsrr***h*kc*sqnprqrrystrsttshfrw*tirrwsysl*lqhskgih
spfssqikrw*lsfgarvnnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC239 (SLC239Q) /CSM/SL/SLC2-B/SLC239Q.Seq.d/                       1185   0.0
SFD385 (SFD385Q) /CSM/SF/SFD3-D/SFD385Q.Seq.d/                       1134   0.0
SLA893 (SLA893Q) /CSM/SL/SLA8-D/SLA893Q.Seq.d/                       1126   0.0
SLA668 (SLA668Q) /CSM/SL/SLA6-C/SLA668Q.Seq.d/                       1124   0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/                       1124   0.0
AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/                       1124   0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/                       1122   0.0
VFF893 (VFF893Q) /CSM/VF/VFF8-D/VFF893Q.Seq.d/                       1114   0.0
AFF229 (AFF229Q) /CSM/AF/AFF2-B/AFF229Q.Seq.d/                       1112   0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/                       1108   0.0
own update 2003. 6.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034190) Dictyostelium discoideum slug cDNA, clone SLC239.     1185   0.0    1
(M23753) D.discoideum ubiquitin mRNA, complete cds, clone DC...  1178   0.0    1
(AU033492) Dictyostelium discoideum slug cDNA, clone SLA893.     1126   0.0    1
(AU033363) Dictyostelium discoideum slug cDNA, clone SLA668.     1124   0.0    1
(BJ428692) Dictyostelium discoideum cDNA clone:ddv12j24, 3' ...  1112   0.0    1
(BJ376276) Dictyostelium discoideum cDNA clone:ddc21j21, 3' ...  1112   0.0    1
(BJ342325) Dictyostelium discoideum cDNA clone:dda13a16, 3' ...  1112   0.0    1
(BJ342052) Dictyostelium discoideum cDNA clone:dda9g10, 3' e...  1112   0.0    1
(BJ399878) Dictyostelium discoideum cDNA clone:dds7j21, 3' e...  1104   0.0    2
(BJ340025) Dictyostelium discoideum cDNA clone:dda11i08, 3' ...  1098   0.0    1
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   348   8e-95
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   348   8e-95
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   346   2e-94
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   346   2e-94
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   346   2e-94
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   338   5e-92
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   338   5e-92
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   338   5e-92
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   338   5e-92
FN315480_1(FN315480|pid:none) Schistosoma japonicum isolate Anhu...   337   1e-91
protein update 2009. 6. 1
PSORT 

 psg: 0.49  gvh: 0.44  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 1.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLC239 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC239Z
3' end seq. 
>SLC239Z.Seq
----------ACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCT
CTGATTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTA
TGCAAATCTTTGTAAAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTG
ATAACATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC
AAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATA
TTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTG
TTAAAACTTTAACAGGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAA
ATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTT
TCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAAT
CCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTAACTAAGTTTTGGTGCCAGAGTGAA
TAATAAAT
Length of 3' end seq. 598
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -