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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC236
Library SL
(Link to library)
Clone ID SLC236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLC236P
(Link to Original site)
Representative DNA sequence 
>SLC236 (SLC236Q) /CSM/SL/SLC2-B/SLC236Q.Seq.d/
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAACACACAACTTTTTTTAATTAA
AATTTAAAATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACAAAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCCCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCACAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTCTCTTACGCATGATGGGAGATCATTGATGATTTCXXXXXXXXX
XACGTGGACAACATGATGTACCCATACATGGTACTGGGTCAACCCATTCACAAACTCCTC
CACTTGCTTCACATAGCTTTTGATCACAAGTTTCATTTCTAACTTGATAATCATATAAAA
ATGGTGAATTTGGTCTACATGAACTCCAAATCTCATAAATTGCATCGGTTTTTGAATCTT
TCATACAACTTAATGGAGCATTTCCACAACCATTTCCATTATCTTCTACACAAAAGAATT
TCTTTGTACCACAACATGAAACAAAAGGTAAATACTTACAACCAGAATTTGGTGCTTTAC
ATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAGGTTTCCACCATTTATCATGTT
CCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTAAAACCAAACATACTAATAAAT
TATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATTTATTTAATTTAGTTGATTAAA
AAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATATAAAACAAATAAGATATAAGA
TTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCTTAAAATTTTCGTTGGCGCCAT
TTCACACTAACCCAAAACACTGGTATTCCAATGGGATTTTTATTAATTTTTTTAAAAAAA
AAGTATATGGGTACTATGGAAGATGGGTATAAATCGATTTTATTA
sequence update 1999. 1.11
Translated Amino Acid sequence 
*f*iasgrpffffffffffffffffffffffentqlfliki*ngvipfgkqtgipvvsat
hlvpgehftnsqngaqrdcsnkqisfnlqviigphgidnpspsfslssyplgsls*ssle
fdgkrhdgi*iqqsreplghllgtiaqsnepqlts*qvlq*PGWVSLTHDGRSLMI---

---VDNMMYPYMVLGQPIHKLLHLLHIAFDHKFHF*ldnhikmvnlvymnskshklhrfl
nlsynlmehfhnhfhyllhkrislyhnmkqkvntynqnlvlyigpltnyhnf*eevstiy
hvpdlhy*limlrklkpnilinylssfflffyfiiyli*likkknv*vplytlli*nk*d
irfrakcyannhpls*nfrwrhftltqntgipmgflliflkkkymgtmedgyksill
Translated Amino Acid sequence (All Frames) 
Frame A:
lvldrerspffffffffffffffffffffff*khttffn*nlkwsysiwxtnwnsscisn
tfssw*tfykftkwgtt*lf**tnfi*ftsdnwatwn**sitlifiiiisiriiiiiiir
i*w*ttrwnlntavtrtpwtfirnhcaiq*ttinimtsftmtwmgfsya*weiiddf---

---twtt*cthtwywvnpftnsstcft*llitsfisnliii*kw*iwst*tpnlincigf
*ifhtt*wsisttisiifytkeflcttt*nkr*ilttriwcftlvl*qtitisrrrfppf
imfricitn**c*en*nqty**iiyphffyffillfi*fs*lkkkmfeflyihy*yktnk
i*dfeqnamqiithslkifvgaish*pktlvfqwdfy*ff*kksiwvlwkmginrfy

Frame B:
*f*iasgrpffffffffffffffffffffffentqlfliki*ngvipfgkqtgipvvsat
hlvpgehftnsqngaqrdcsnkqisfnlqviigphgidnpspsfslssyplgsls*ssle
fdgkrhdgi*iqqsreplghllgtiaqsnepqlts*qvlq*PGWVSLTHDGRSLMI---

---rgqhdvpihgtgsthsqtpplashsf*sqvsflt**sykngefglhelqis*iasvf
esfiqlngafpqpfplsstqknffvpqhetkgkylqpefgalhwssdklsqflgggfhhl
scsgfallidnvektktkhtnklfiliffiflfyylfnlvd*kkkclssfiyiinikqir
ykisskmlck*sptllkfslapfhtnpkhwysngifinffkkkvygyygrwv*idfi

Frame C:
ssrsravalffffffffffffffffffffflkthnff*lkfkmelfhlxnklefqlyqqh
i*flvnilqihkmghnvivlinkfhliyk**lghmeliihhphfhyhhih*dhyhnhh*n
lmvndtmefeysshenpldiy*eplrnpmnhn*hhdkfyndldgfllrmmgdh**f---

---VDNMMYPYMVLGQPIHKLLHLLHIAFDHKFHF*ldnhikmvnlvymnskshklhrfl
nlsynlmehfhnhfhyllhkrislyhnmkqkvntynqnlvlyigpltnyhnf*eevstiy
hvpdlhy*limlrklkpnilinylssfflffyfiiyli*likkknv*vplytlli*nk*d
irfrakcyannhpls*nfrwrhftltqntgipmgflliflkkkymgtmedgyksill
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC236 (SLC236Q) /CSM/SL/SLC2-B/SLC236Q.Seq.d/                       1156   0.0
SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/                        852   0.0
SFL363 (SFL363Q) /CSM/SF/SFL3-C/SFL363Q.Seq.d/                        852   0.0
SFK851 (SFK851Q) /CSM/SF/SFK8-C/SFK851Q.Seq.d/                        852   0.0
SFJ163 (SFJ163Q) /CSM/SF/SFJ1-C/SFJ163Q.Seq.d/                        852   0.0
SFE669 (SFE669Q) /CSM/SF/SFE6-C/SFE669Q.Seq.d/                        852   0.0
CHC584 (CHC584Q) /CSM/CH/CHC5-D/CHC584Q.Seq.d/                        852   0.0
CFH201 (CFH201Q) /CSM/CF/CFH2-A/CFH201Q.Seq.d/                        852   0.0
CFG712 (CFG712Q) /CSM/CF/CFG7-A/CFG712Q.Seq.d/                        852   0.0
CFF677 (CFF677Q) /CSM/CF/CFF6-D/CFF677Q.Seq.d/                        852   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034188) Dictyostelium discoideum slug cDNA, clone SLC236.      852   0.0    3
(AU061431) Dictyostelium discoideum slug cDNA, clone SLE226.      852   0.0    1
(BJ390777) Dictyostelium discoideum cDNA clone:dds23n15, 5' ...   852   0.0    1
(BJ390475) Dictyostelium discoideum cDNA clone:dds22f14, 5' ...   852   0.0    1
(BJ389679) Dictyostelium discoideum cDNA clone:dds19m15, 5' ...   852   0.0    1
(BJ386772) Dictyostelium discoideum cDNA clone:dds10i18, 5' ...   852   0.0    1
(BJ363667) Dictyostelium discoideum cDNA clone:ddc27g21, 5' ...   852   0.0    1
(BJ361145) Dictyostelium discoideum cDNA clone:ddc9g04, 5' e...   852   0.0    1
(BJ360502) Dictyostelium discoideum cDNA clone:ddc6n09, 5' e...   852   0.0    1
(BJ360159) Dictyostelium discoideum cDNA clone:ddc4l17, 5' e...   852   0.0    1
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   312   1e-83
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       120   1e-25
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   116   1e-24
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    92   4e-17
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    50   2e-04
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    47   0.001
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    44   0.015
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.020
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-...    30   0.12
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi...    30   0.12
protein update 2009. 6. 1
PSORT 

 psg: 0.77  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC236 is cyt
5' end seq. ID SLC236F
5' end seq. 
>SLC236F.Seq
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAACACACAACTTTTTTTAATTAA
AATTTAAAATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACAAAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCCCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCACAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTCTCTTACGCATGATGGGAGATCATTGATGATTTC---------
-
Length of 5' end seq. 531
3' end seq. ID SLC236Z
3' end seq. 
>SLC236Z.Seq
----------ACGTGGACAACATGATGTACCCATACATGGTACTGGGTCAACCCATTCAC
AAACTCCTCCACTTGCTTCACATAGCTTTTGATCACAAGTTTCATTTCTAACTTGATAAT
CATATAAAAATGGTGAATTTGGTCTACATGAACTCCAAATCTCATAAATTGCATCGGTTT
TTGAATCTTTCATACAACTTAATGGAGCATTTCCACAACCATTTCCATTATCTTCTACAC
AAAAGAATTTCTTTGTACCACAACATGAAACAAAAGGTAAATACTTACAACCAGAATTTG
GTGCTTTACATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAGGTTTCCACCATT
TATCATGTTCCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTAAAACCAAACATA
CTAATAAATTATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATTTATTTAATTTAG
TTGATTAAAAAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATATAAAACAAATAA
GATATAAGATTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCTTAAAATTTTCGT
TGGCGCCATTTCACACTAACCCAAAACACTGGTATTCCAATGGGATTTTTATTAATTTTT
TTAAAAAAAAAGTATATGGGTACTATGGAAGATGGGTATAAATCGATTTTATTA
Length of 3' end seq. 704
Connected seq. ID SLC236P
Connected seq. 
>SLC236P.Seq
CTAGTTCTAGATCGCGAGCGGTCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAACACACAACTTTTTTTAATTAA
AATTTAAAATGGAGTTATTCCATTTGGNAAACAAACTGGAATTCCAGTTGTATCAGCAAC
ACATTTAGTTCCTGGTGAACATTTTACAAATTCACAAAATGGGGCACAACGTGATTGTTC
TAATAAACAAATTTCATTTAATTTACAAGTGATAATTGGGCCACATGGAATTGATAATCC
ATCACCCTCATTTTCATTATCATCATATCCATTAGGATCATTATCATAATCATCATTAGA
ATTTGATGGTAAACGACACGATGGAATTTGAATACAGCAGTCACGAGAACCCCTTGGACA
TTTATTAGGAACCATTGCGCAATCCAATGAACCACAATTAACATCATGACAAGTTTTACA
ATGACCTGGATGGGTTTCTCTTACGCATGATGGGAGATCATTGATGATTTC---------
-ACGTGGACAACATGATGTACCCATACATGGTACTGGGTCAACCCATTCACAAACTCCTC
CACTTGCTTCACATAGCTTTTGATCACAAGTTTCATTTCTAACTTGATAATCATATAAAA
ATGGTGAATTTGGTCTACATGAACTCCAAATCTCATAAATTGCATCGGTTTTTGAATCTT
TCATACAACTTAATGGAGCATTTCCACAACCATTTCCATTATCTTCTACACAAAAGAATT
TCTTTGTACCACAACATGAAACAAAAGGTAAATACTTACAACCAGAATTTGGTGCTTTAC
ATTGGTCCTCTGACAAACTATCACAATTTCTAGGAGGAGGTTTCCACCATTTATCATGTT
CCGGATTTGCATTACTAATTGATAATGTTGAGAAAACTAAAACCAAACATACTAATAAAT
TATTTATCCTCATTTTTTTTATTTTTTTATTTTATTATTTATTTAATTTAGTTGATTAAA
AAAAAAAATGTTTGAGTTCCTTTATATACATTATTAATATAAAACAAATAAGATATAAGA
TTTCGAGCAAAATGCTATGCAAATAATCACCCACTCTCTTAAAATTTTCGTTGGCGCCAT
TTCACACTAACCCAAAACACTGGTATTCCAATGGGATTTTTATTAATTTTTTTAAAAAAA
AAGTATATGGGTACTATGGAAGATGGGTATAAATCGATTTTATTA
Length of connected seq. 1235
Full length Seq ID -
Full length Seq. -
Length of full length seq. -