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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC235
Library SL
(Link to library)
Clone ID SLC235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10207-1
Original site URL
Representative seq. ID SLC235E
(Link to Original site)
Representative DNA sequence 
>SLC235 (SLC235Q) /CSM/SL/SLC2-B/SLC235Q.Seq.d/
AAAAAATATATTTTTAATTAATTTTTAATTAATTTTTTTTAATTTTTTCAATTTTTTATT
TTTTTAAAGGAAAATATAACGTAATCAATTTTATTTTTCAATTAATTTTTTAAAAAAATG
ACATCAACAAATGAACCAATTCCAACTGAAGAAGAAATTAAAAATGGATTTAAATTTATT
CAAGATGAAATTTGTAAATTTTTAATTACAACAACAGGTGGTCATCAACAATATAGTGAA
GATAAATGGGATTATACTAAAGGTAGTGGTGGTGGTATTAGTAGAGTTTGGGAAGGAAAA
GAAGAGGAAGGATTTTATTTAAACCAAGATTACCAATCACAAAACAACAAATGTGACAAA
ATTGAAAAAGGTGGTGTTAATTTCTCTTATATCGTTGGTAGTAATTTACCATCAGCAGCA
GCAACTCAATTTAAAATAGCACCAGATACCAAATACATTGCCACTGGTGTAAGTCTAGTC
ATCCACCCATACAACCCAAATGTGCCAACCATTCATATGAATGTAAGATACTTTGAAGCT
GGTGATGTTTGGTGGTTTGGTGGTGGTGTTGATTTGACACCAGTCTACCCAAAATTAGAT
CAAGTCGTTGAATTTTCATTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGA
GAACAAAACCTCATACGCATTGGGTAAGGCAGAATGTGACAGTTATTTCTTCCTTCCACA
TAGAGGTGAAACCCGTGGCGTTGGTGGTTTATTTNTCGATCATCTTAAATCCGATAAAGC
AAAGACTTGGAAGTTCATCTACCAATTAGGTTTATCATTCATCGATCTCTATAAACCATT
CCTTGTTAATAATAGTTCAATCTCTTATGATAAAGTTCAAAGAGAATATCAACTATATCG
TCGTTCTCGTTATGTTGAATTCAATCTCCTCTTTGATCGTGGTACTAAATTTGGTATTCT
CTCTGAAGGTCGTACTGAATCAATCCTTATGTCATTACCTGCAGTTTGTAAATGGAAATA
TAATTATAAACCAGAAGAAAATACTCCTGAAGCAAATTTATTAACTTTTTTGAGACCAAG
AGATTGGTTAAACGAAAATCAAGAAAATAAAAATTAATTTAAAAAATATATATAAAGAAA
TAAAATAAAATAATAATAAAAATTGTAATTTTAATTAAAAAAATTTTAAAATTAAAAT
sequence update 1999. 7.13
Translated Amino Acid sequence 
kkyifn*flinff*ffqffiflkenit*silffn*FFKKMTSTNEPIPTEEEIKNGFKFI
QDEICKFLITTTGGHQQYSEDKWDYTKGSGGGISRVWEGKEEEGFYLNQDYQSQNNKCDK
IEKGGVNFSYIVGSNLPSAAATQFKIAPDTKYIATGVSLVIHPYNPNVPTIHMNVRYFEA
GDVWWFGGGVDLTPVYPKLDQVVEFSFNIEKSMRPIWPRGEQNLIRIG*grm*qlflpst
*r*npwrwwfixrss*ir*skdlevhlpirfiihrsl*tipc***fnll**sskristis
sfslc*iqspl*swy*iwysl*rsy*inpyvitcsl*mei*l*trrkys*skfinffetk
rlvkrksrk*kli*kiyikk*nkiiikivilikkilklk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkyifn*flinff*ffqffiflkenit*silffn*FFKKMTSTNEPIPTEEEIKNGFKFI
QDEICKFLITTTGGHQQYSEDKWDYTKGSGGGISRVWEGKEEEGFYLNQDYQSQNNKCDK
IEKGGVNFSYIVGSNLPSAAATQFKIAPDTKYIATGVSLVIHPYNPNVPTIHMNVRYFEA
GDVWWFGGGVDLTPVYPKLDQVVEFSFNIEKSMRPIWPRGEQNLIRIG*grm*qlflpst
*r*npwrwwfixrss*ir*skdlevhlpirfiihrsl*tipc***fnll**sskristis
sfslc*iqspl*swy*iwysl*rsy*inpyvitcsl*mei*l*trrkys*skfinffetk
rlvkrksrk*kli*kiyikk*nkiiikivilikkilklk


Frame B:
kniflinf*liffnffnflff*rki*rnqfyfsinflkk*hqqmnqfqlkkklkmdlnlf
kmkfvnf*lqqqvvinnivkingiilkvvvvvlvefgkekkrkdfi*tkitnhkttnvtk
lkkvvlislislvviyhqqqqlnlk*hqipntlplv*v*ssthttqmcqpfi*m*dtlkl
vmfgglvvvli*hqstqn*ikslnfhstlkkvcdqygqeenktsyalgkaecdsyfflph
rgetrgvgglfxdhlksdkaktwkfiyqlglsfidlykpflvnnssisydkvqreyqlyr
rsryvefnllfdrgtkfgilsegrtesilmslpavckwkynykpeentpeanlltflrpr
dwlnenqenkn*fkkyi*rnkik***kl*f*lkkf*n*n


Frame C:
kiyf*lifn*fflifsifyffkgkynvinfifqlif*kndink*tnsn*rrn*kwi*iys
r*nl*ifnynnrwssti**r*mgly*r*wwwy**slgrkrrgrilfkprlpitkqqm*qn
*krwc*fllyrw**ftisssnsi*nstryqihchwcksshppiqpkcanhsyeckil*sw
*clvvwwwc*fdtslpkirssr*ifiqh*kkyatnmakrrtkphthwvrqnvtvissfhi
evkpvalvvyxsiilnpikqrlgssstn*vyhssisinhslliivqslmikfkeninyiv
vlvmlnsisslivvlnlvfslkvvlnqslchylqfvngniiinqkkillkqiy*lf*dqe
ig*tkikkikinlkniykeik*nnnkncnfn*knfkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC235 (SLC235Q) /CSM/SL/SLC2-B/SLC235Q.Seq.d/                       1978   0.0
VFI505 (VFI505Q) /CSM/VF/VFI5-A/VFI505Q.Seq.d/                       1963   0.0
VFI743 (VFI743Q) /CSM/VF/VFI7-B/VFI743Q.Seq.d/                       1935   0.0
VSJ889 (VSJ889Q) /CSM/VS/VSJ8-D/VSJ889Q.Seq.d/                       1929   0.0
SLC258 (SLC258Q) /CSM/SL/SLC2-C/SLC258Q.Seq.d/                       1183   0.0
VSE752 (VSE752Q) /CSM/VS/VSE7-C/VSE752Q.Seq.d/                       1130   0.0
VFO562 (VFO562Q) /CSM/VF/VFO5-C/VFO562Q.Seq.d/                       1126   0.0
VFN776 (VFN776Q) /CSM/VF/VFN7-D/VFN776Q.Seq.d/                        950   0.0
VSF329 (VSF329Q) /CSM/VS/VSF3-B/VSF329Q.Seq.d/                        942   0.0
VSI355 (VSI355Q) /CSM/VS/VSI3-C/VSI355Q.Seq.d/                        938   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060918) Dictyostelium discoideum slug cDNA, clone SLC235.     1076   0.0    2
(AU060927) Dictyostelium discoideum slug cDNA, clone SLC258.      975   0.0    5
(AU263348) Dictyostelium discoideum vegetative cDNA clone:VS...   936   0.0    3
(BJ432309) Dictyostelium discoideum cDNA clone:ddv18f11, 3' ...   936   0.0    4
(BJ432237) Dictyostelium discoideum cDNA clone:ddv18i01, 3' ...   936   0.0    2
(AU270640) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    3
(BJ436272) Dictyostelium discoideum cDNA clone:ddv30k15, 3' ...   809   0.0    3
(BJ414110) Dictyostelium discoideum cDNA clone:ddv18i01, 5' ...   936   0.0    1
(BJ435890) Dictyostelium discoideum cDNA clone:ddv28h19, 3' ...   785   0.0    4
(AU034187) Dictyostelium discoideum slug cDNA, clone SLC235.      930   0.0    1
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB784921_1(FB784921|pid:none) Sequence 4194 from Patent WO200803...   160   1e-69
CP000806_3197(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   155   5e-66
BA000039_682(BA000039|pid:none) Thermosynechococcus elongatus BP...   149   3e-65
CP000951_1798(CP000951|pid:none) Synechococcus sp. PCC 7002, com...   152   3e-65
(Q8DL15) RecName: Full=Coproporphyrinogen-III oxidase, aerobic; ...   149   3e-65
CP000117_4552(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   154   1e-64
CP001287_1111(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...   152   2e-64
CP000447_30(CP000447|pid:none) Shewanella frigidimarina NCIMB 40...   165   4e-64
CP000240_2759(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1...   145   5e-63
(Q8YX58) RecName: Full=Coproporphyrinogen-III oxidase, aerobic 2...   151   6e-63
protein update 2009. 7. 4
PSORT 

 psg: 0.57  gvh: 0.50  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC235 is cyt
5' end seq. ID SLC235F
5' end seq. 
>SLC235F.Seq
AAAAAATATATTTTTAATTAATTTTTAATTAATTTTTTTTAATTTTTTCAATTTTTTATT
TTTTTAAAGGAAAATATAACGTAATCAATTTTATTTTTCAATTAATTTTTTAAAAAAATG
ACATCAACAAATGAACCAATTCCAACTGAAGAAGAAATTAAAAATGGATTTAAATTTATT
CAAGATGAAATTTGTAAATTTTTAATTACAACAACAGGTGGTCATCAACAATATAGTGAA
GATAAATGGGATTATACTAAAGGTAGTGGTGGTGGTATTAGTAGAGTTTGGGAAGGAAAA
GAAGAGGAAGGATTTTATTTAAACCAAGATTACCAATCACAAAACAACAAATGTGACAAA
ATTGAAAAAGGTGGTGTTAATTTCTCTTATATCGTTGGTAGTAATTTACCATCAGCAGCA
GCAACTCAATTTAAAATAGCACCAGATACCAAATACATTGCCACTGGTGTAAGTCTAGTC
ATCCACCCATACAACCCAAATGTGCCAACCATTCATATGAATGTAAGATACTTTGAAGCT
GGTGATGTTTGGTGGTTTGGTGGTGGTGTTGATTTGACACCAGTCTACCCAAAATTAGAT
CAAGTCGTTGAATTTTCATTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGA
GACAAAACCTCATACGCATTGGGTAAGGCAGAATGTGACAGTTATTTC----------
Length of 5' end seq. 708
3' end seq. ID SLC235Z
3' end seq. 
>SLC235Z.Seq
----------CATTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGAGAACAA
AACCTCATACGCATTGGGTAAGGCAGAATGTGACAGTTATTTCTTCCTTCCACATAGAGG
TGAAACCCGTGGCGTTGGTGGTTTATTTNTCGATCATCTTAAATCCGATAAAGCAAAGAC
TTGGAAGTTCATCTACCAATTAGGTTTATCATTCATCGATCTCTATAAACCATTCCTTGT
TAATAATAGTTCAATCTCTTATGATAAAGTTCAAAGAGAATATCAACTATATCGTCGTTC
TCGTTATGTTGAATTCAATCTCCTCTTTGATCGTGGTACTAAATTTGGTATTCTCTCTGA
AGGTCGTACTGAATCAATCCTTATGTCATTACCTGCAGTTTGTAAATGGAAATATAATTA
TAAACCAGAAGAAAATACTCCTGAAGCAAATTTATTAACTTTTTTGAGACCAAGAGATTG
GTTAAACGAAAATCAAGAAAATAAAAATTAATTTAAAAAATATATATAAAGAAATAAAAT
AAAATAATAATAAAAATTGTAATTTTAATTAAAAAAATTTTAAAATTAAAAT
Length of 3' end seq. 582
Connected seq. ID SLC235P
Connected seq. 
>SLC235P.Seq
AAAAAATATATTTTTAATTAATTTTTAATTAATTTTTTTTAATTTTTTCAATTTTTTATT
TTTTTAAAGGAAAATATAACGTAATCAATTTTATTTTTCAATTAATTTTTTAAAAAAATG
ACATCAACAAATGAACCAATTCCAACTGAAGAAGAAATTAAAAATGGATTTAAATTTATT
CAAGATGAAATTTGTAAATTTTTAATTACAACAACAGGTGGTCATCAACAATATAGTGAA
GATAAATGGGATTATACTAAAGGTAGTGGTGGTGGTATTAGTAGAGTTTGGGAAGGAAAA
GAAGAGGAAGGATTTTATTTAAACCAAGATTACCAATCACAAAACAACAAATGTGACAAA
ATTGAAAAAGGTGGTGTTAATTTCTCTTATATCGTTGGTAGTAATTTACCATCAGCAGCA
GCAACTCAATTTAAAATAGCACCAGATACCAAATACATTGCCACTGGTGTAAGTCTAGTC
ATCCACCCATACAACCCAAATGTGCCAACCATTCATATGAATGTAAGATACTTTGAAGCT
GGTGATGTTTGGTGGTTTGGTGGTGGTGTTGATTTGACACCAGTCTACCCAAAATTAGAT
CAAGTCGTTGAATTTTCATTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGA
GACAAAACCTCATACGCATTGGGTAAGGCAGAATGTGACAGTTATTTC----------CA
TTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGAGAACAAAACCTCATACGC
ATTGGGTAAGGCAGAATGTGACAGTTATTTCTTCCTTCCACATAGAGGTGAAACCCGTGG
CGTTGGTGGTTTATTTNTCGATCATCTTAAATCCGATAAAGCAAAGACTTGGAAGTTCAT
CTACCAATTAGGTTTATCATTCATCGATCTCTATAAACCATTCCTTGTTAATAATAGTTC
AATCTCTTATGATAAAGTTCAAAGAGAATATCAACTATATCGTCGTTCTCGTTATGTTGA
ATTCAATCTCCTCTTTGATCGTGGTACTAAATTTGGTATTCTCTCTGAAGGTCGTACTGA
ATCAATCCTTATGTCATTACCTGCAGTTTGTAAATGGAAATATAATTATAAACCAGAAGA
AAATACTCCTGAAGCAAATTTATTAACTTTTTTGAGACCAAGAGATTGGTTAAACGAAAA
TCAAGAAAATAAAAATTAATTTAAAAAATATATATAAAGAAATAAAATAAAATAATAATA
AAAATTGTAATTTTAATTAAAAAAATTTTAAAATTAAAAT
Length of connected seq. 1290
Full length Seq ID SLC235E
Full length Seq. 
>SLC235E.Seq
AAAAAATATATTTTTAATTAATTTTTAATTAATTTTTTTTAATTTTTTCAATTTTTTATT
TTTTTAAAGGAAAATATAACGTAATCAATTTTATTTTTCAATTAATTTTTTAAAAAAATG
ACATCAACAAATGAACCAATTCCAACTGAAGAAGAAATTAAAAATGGATTTAAATTTATT
CAAGATGAAATTTGTAAATTTTTAATTACAACAACAGGTGGTCATCAACAATATAGTGAA
GATAAATGGGATTATACTAAAGGTAGTGGTGGTGGTATTAGTAGAGTTTGGGAAGGAAAA
GAAGAGGAAGGATTTTATTTAAACCAAGATTACCAATCACAAAACAACAAATGTGACAAA
ATTGAAAAAGGTGGTGTTAATTTCTCTTATATCGTTGGTAGTAATTTACCATCAGCAGCA
GCAACTCAATTTAAAATAGCACCAGATACCAAATACATTGCCACTGGTGTAAGTCTAGTC
ATCCACCCATACAACCCAAATGTGCCAACCATTCATATGAATGTAAGATACTTTGAAGCT
GGTGATGTTTGGTGGTTTGGTGGTGGTGTTGATTTGACACCAGTCTACCCAAAATTAGAT
CAAGTCGTTGAATTTTCATTCAACATTGAAAAAAGTATGCGACCAATATGGCCAAGAGGA
GAACAAAACCTCATACGCATTGGGTAAGGCAGAATGTGACAGTTATTTCTTCCTTCCACA
TAGAGGTGAAACCCGTGGCGTTGGTGGTTTATTTNTCGATCATCTTAAATCCGATAAAGC
AAAGACTTGGAAGTTCATCTACCAATTAGGTTTATCATTCATCGATCTCTATAAACCATT
CCTTGTTAATAATAGTTCAATCTCTTATGATAAAGTTCAAAGAGAATATCAACTATATCG
TCGTTCTCGTTATGTTGAATTCAATCTCCTCTTTGATCGTGGTACTAAATTTGGTATTCT
CTCTGAAGGTCGTACTGAATCAATCCTTATGTCATTACCTGCAGTTTGTAAATGGAAATA
TAATTATAAACCAGAAGAAAATACTCCTGAAGCAAATTTATTAACTTTTTTGAGACCAAG
AGATTGGTTAAACGAAAATCAAGAAAATAAAAATTAATTTAAAAAATATATATAAAGAAA
TAAAATAAAATAATAATAAAAATTGTAATTTTAATTAAAAAAATTTTAAAATTAAAAT
Length of full length seq. 1198