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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC233
Library SL
(Link to library)
Clone ID SLC233
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12870-1
Original site URL
Representative seq. ID SLC233P
(Link to Original site)
Representative DNA sequence 
>SLC233 (SLC233Q) /CSM/SL/SLC2-B/SLC233Q.Seq.d/
ACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGAACA
AGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAGATC
AGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATCACA
AGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGATCAA
TCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGGTTA
CGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTACCA
TGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAATTT
TGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACACTAA
GGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAGGAAATGGTTATTTT
GGGTACTCAATACGCTGGTGAAATGAAAAAAGGTATTCTCACCATCATGATGTATCTCAT
GCCAAAGATGGGTGTCTTACCATTACATTCCTCTTGCAATCAAGCTCGTAACAATGGTGA
TACCACATTATTCTTTGGTCTCTCTGGTACTGGTAAAACTACATTATCCGCCGATATTAA
CCGTGAATTAATTXXXXXXXXXXTCCCAGCTATTGCCGGTCATCCAAAGAATATCATTAT
GTTAACTTGTGATGCTTTTGGTATTCTCCCACCAGTATCTCGTTTAGATGCCAATCAAGT
TATGTACCATATCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTGAAGTTGGTGTCAC
CGAACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCGTATGGCATCCAAC
CAAATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTCGTGCTTGGTTAAT
TAATACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTAAATTGGCCTACAC
TCGTGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTCCAACCACTAAAAT
GGATGTTTTCGGTTTCCAAGTACCAAATAGTTGTCCAGGTGTTCCATCTGAAATTTTAAT
GCCAATTAATGGTTGGGCTGATAAAGAGAAATATGTTTCAACTATGCATAAATTGGCTAA
ATTATTTATTGAAAATTTCAAAAAATTCCAAGATAAAGCTTCACCAGAACTTGTAGCAGC
CGGTCCAATATTACCACAATAAAAAAATAAAAATAAAAATAAAAACCAAGAAAAGAGTGT
ATATTTTTTAAAACTCAAAGGAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAAGTAAAT
sequence update 1999. 1.11
Translated Amino Acid sequence 
HFSGNAKIFHNPAVAVLYEQALAFEHGSAITSTGALVTRSGVKTGRSPKDKRIVKEPSSQ
DDIWWGPVNIAMDDLSFMINRERAIDYLNTQEKIYVIDGYAGWDPKYRIKVRVICARAYH
ALFMHNMLIRPANREELRNFGEPDYTIYNAGQFPANRYTKGMSSSSSIAIDFARKEMVIL
GTQYAGEMKKGILTIMMYLMPKMGVLPLHSSCNQARNNGDTTLFFGLSGTGKTTLSADIN
RELI---

---PAIAGHPKNIIMLTCDAFGILPPVSRLDANQVMYHIIQGYTAKVAGTEVGVTEPTAT
FSSCYGEPFIVWHPTKYAEMLASQLHKHSARAWLINTGWTGGSHGVGSRIKLAYTRAIID
AIHSGELEKIPTTKMDVFGFQVPNSCPGVPSEILMPINGWADKEKYVSTMHKLAKLFIEN
FKKFQDKASPELVAAGPILPQ*knknknknqeksvyflklkgkkik*nkik*nkikvn
Translated Amino Acid sequence (All Frames) 
Frame A:
tffr*ckdfp*sssssii*tsigi*twisnykyrcignqirckdwkitkg*enckgtiit
r*ylvgtsqycng*sfiydqs*kshrlfehsrkdlryrwlrrmgskisyqg*shlrtclp
cslyaqyvnsssq*rrvkkfwrtrlhhlqcrsipskslh*gyvfklinrh*frs*gngyf
gysirw*nekryshhhdvshakdgcltitfllqsss*qw*yhiilwslwyw*nyiirry*
p*in---

---sqllpviqrislc*lvmllvfshqylv*mpiklctisfkvippklpvlklvspnqlq
pfqvvmvnhssygiqpntlkcwllnsiniqlvlg*lilvglvvlmvlvlvlnwptlvpss
mpftvenlkkfqplkwmfsvskyqivvqvfhlkf*cqlmvglikrnmfqlcinwlnyllk
isknskiklhqnl*qpvqyyhnkkikikiktkkrvyif*nskekk*nkik*nkik*k*

Frame B:
HFSGNAKIFHNPAVAVLYEQALAFEHGSAITSTGALVTRSGVKTGRSPKDKRIVKEPSSQ
DDIWWGPVNIAMDDLSFMINRERAIDYLNTQEKIYVIDGYAGWDPKYRIKVRVICARAYH
ALFMHNMLIRPANREELRNFGEPDYTIYNAGQFPANRYTKGMSSSSSIAIDFARKEMVIL
GTQYAGEMKKGILTIMMYLMPKMGVLPLHSSCNQARNNGDTTLFFGLSGTGKTTLSADIN
RELI---

---psycrsskeyhyvnl*cfwysptsisfrcqssyvpyhsrlyrqscry*swchrtncn
lfkllw*tihrmasnqir*nvgfstp*tfssclvn*ywldwwfswcwfsy*iglhschhr
chsqwrt*knsnh*ngcfrfpstk*lsrcsi*nfnan*wlg**reicfnya*ig*iiy*k
fqkipr*sftrtcssrsnittikk*k*k*kprkeciffktqrkknkik*nkik*nksk

Frame C:
ifqvmqrfsiiqq*qyymnkhwhlnmdqqlqvqvhw*pdqv*rledhqrirel*rnhhhk
mifggdqsilqwmifhl*sivkepsii*tlkkrstlsmvtqdgiqnivsrlesfahvptm
lslctic*fvqpieks*eilenqitpftmqvnsqqivtlrvclqahqsplislvrkwlfw
vlntlvk*kkvfsps*ciscqrwvsyhyiplaiklvtmviphyslvslvlvklhyppilt
vn*---

---PAIAGHPKNIIMLTCDAFGILPPVSRLDANQVMYHIIQGYTAKVAGTEVGVTEPTAT
FSSCYGEPFIVWHPTKYAEMLASQLHKHSARAWLINTGWTGGSHGVGSRIKLAYTRAIID
AIHSGELEKIPTTKMDVFGFQVPNSCPGVPSEILMPINGWADKEKYVSTMHKLAKLFIEN
FKKFQDKASPELVAAGPILPQ*knknknknqeksvyflklkgkkik*nkik*nkikvn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC233 (SLC233Q) /CSM/SL/SLC2-B/SLC233Q.Seq.d/                       2597   0.0
AFL109 (AFL109Q) /CSM/AF/AFL1-A/AFL109Q.Seq.d/                       1191   0.0
SFF434 (SFF434Q) /CSM/SF/SFF4-B/SFF434Q.Seq.d/                       1176   0.0
CFG166 (CFG166Q) /CSM/CF/CFG1-C/CFG166Q.Seq.d/                       1176   0.0
CFB335 (CFB335Q) /CSM/CF/CFB3-B/CFB335Q.Seq.d/                       1176   0.0
SFC665 (SFC665Q) /CSM/SF/SFC6-C/SFC665Q.Seq.d/                       1168   0.0
AFO776 (AFO776Q) /CSM/AF/AFO7-D/AFO776Q.Seq.d/                       1168   0.0
AFD154 (AFD154Q) /CSM/AF/AFD1-C/AFD154Q.Seq.d/                       1152   0.0
AFO837 (AFO837Q) /CSM/AF/AFO8-B/AFO837Q.Seq.d/                       1148   0.0
CFB382 (CFB382Q) /CSM/CF/CFB3-D/CFB382Q.Seq.d/                       1110   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...  1453   0.0    1
(AU060917) Dictyostelium discoideum slug cDNA, clone SLC233.     1453   0.0    1
(BJ328108) Dictyostelium discoideum cDNA clone:dda23a03, 5' ...  1191   0.0    1
(AU034185) Dictyostelium discoideum slug cDNA, clone SLC233.     1183   0.0    1
(BJ398162) Dictyostelium discoideum cDNA clone:dds11d10, 3' ...  1176   0.0    1
(BJ373492) Dictyostelium discoideum cDNA clone:ddc3f09, 3' e...  1176   0.0    1
(BJ372643) Dictyostelium discoideum cDNA clone:ddc13c17, 3' ...  1176   0.0    1
(BJ399556) Dictyostelium discoideum cDNA clone:dds6a18, 3' e...  1168   0.0    1
(BJ346414) Dictyostelium discoideum cDNA clone:dda30h19, 3' ...  1168   0.0    1
(BJ341663) Dictyostelium discoideum cDNA clone:dda7k13, 3' e...  1152   0.0    1
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ826618_1(FJ826618|pid:none) Epichloe festucae strain E2368 pho...   336   1e-90
CU633895_124(CU633895|pid:none) Podospora anserina genomic DNA c...   334   4e-90
AB075548_1(AB075548|pid:none) Toxoplasma gondii pck mRNA for pho...   330   1e-88
AE017349_359(AE017349|pid:none) Cryptococcus neoformans var. neo...   328   4e-88
AP007155_153(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   327   6e-88
FM992695_19(FM992695|pid:none) Candida dubliniensis CD36 chromos...   324   5e-87
(Q96UL8) RecName: Full=Phosphoenolpyruvate carboxykinase [ATP]; ...   321   5e-86
AM920427_936(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   318   2e-85
(Q753M0) RecName: Full=Phosphoenolpyruvate carboxykinase [ATP]; ...   317   9e-85
AY723843_1(AY723843|pid:none) Saccharomyces cerevisiae clone FLH...   315   3e-84
protein update 2009. 6. 1
PSORT 

 psg: 0.81  gvh: 0.45  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLC233 is cyt
5' end seq. ID SLC233F
5' end seq. 
>SLC233F.Seq
ACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGAACA
AGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAGATC
AGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATCACA
AGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGATCAA
TCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGGTTA
CGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTACCA
TGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAATTT
TGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACACTAA
GGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAGGAAATGGTTATTTT
GGGTACTCAATACGCTGGTGAAATGAAAAAAGGTATTCTCACCATCATGATGTATCTCAT
GCCAAAGATGGGTGTCTTACCATTACATTCCTCTTGCAATCAAGCTCGTAACAATGGTGA
TACCACATTATTCTTTGGTCTCTCTGGTACTGGTAAAACTACATTATCCGCCGATATTAA
CCGTGAATTAATT----------
Length of 5' end seq. 733
3' end seq. ID SLC233Z
3' end seq. 
>SLC233Z.Seq
----------TCCCAGCTATTGCCGGTCATCCAAAGAATATCATTATGTTAACTTGTGAT
GCTTTTGGTATTCTCCCACCAGTATCTCGTTTAGATGCCAATCAAGTTATGTACCATATC
ATTCAAGGTTATACCGCCAAAGTTGCCGGTACTGAAGTTGGTGTCACCGAACCAACTGCA
ACCTTTTCAAGTTGTTATGGTGAACCATTCATCGTATGGCATCCAACCAAATACGCTGAA
ATGTTGGCTTCTCAACTCCATAAACATTCAGCTCGTGCTTGGTTAATTAATACTGGTTGG
ACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTAAATTGGCCTACACTCGTGCCATCATC
GATGCCATTCACAGTGGAGAACTTGAAAAAATTCCAACCACTAAAATGGATGTTTTCGGT
TTCCAAGTACCAAATAGTTGTCCAGGTGTTCCATCTGAAATTTTAATGCCAATTAATGGT
TGGGCTGATAAAGAGAAATATGTTTCAACTATGCATAAATTGGCTAAATTATTTATTGAA
AATTTCAAAAAATTCCAAGATAAAGCTTCACCAGAACTTGTAGCAGCCGGTCCAATATTA
CCACAATAAAAAAATAAAAATAAAAATAAAAACCAAGAAAAGAGTGTATATTTTTTAAAA
CTCAAAGGAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAGTAAAT
Length of 3' end seq. 707
Connected seq. ID SLC233P
Connected seq. 
>SLC233P.Seq
ACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGAACA
AGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAGATC
AGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATCACA
AGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGATCAA
TCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGGTTA
CGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTACCA
TGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAATTT
TGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACACTAA
GGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAGGAAATGGTTATTTT
GGGTACTCAATACGCTGGTGAAATGAAAAAAGGTATTCTCACCATCATGATGTATCTCAT
GCCAAAGATGGGTGTCTTACCATTACATTCCTCTTGCAATCAAGCTCGTAACAATGGTGA
TACCACATTATTCTTTGGTCTCTCTGGTACTGGTAAAACTACATTATCCGCCGATATTAA
CCGTGAATTAATT----------TCCCAGCTATTGCCGGTCATCCAAAGAATATCATTAT
GTTAACTTGTGATGCTTTTGGTATTCTCCCACCAGTATCTCGTTTAGATGCCAATCAAGT
TATGTACCATATCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTGAAGTTGGTGTCAC
CGAACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCGTATGGCATCCAAC
CAAATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTCGTGCTTGGTTAAT
TAATACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTAAATTGGCCTACAC
TCGTGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTCCAACCACTAAAAT
GGATGTTTTCGGTTTCCAAGTACCAAATAGTTGTCCAGGTGTTCCATCTGAAATTTTAAT
GCCAATTAATGGTTGGGCTGATAAAGAGAAATATGTTTCAACTATGCATAAATTGGCTAA
ATTATTTATTGAAAATTTCAAAAAATTCCAAGATAAAGCTTCACCAGAACTTGTAGCAGC
CGGTCCAATATTACCACAATAAAAAAATAAAAATAAAAATAAAAACCAAGAAAAGAGTGT
ATATTTTTTAAAACTCAAAGGAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAAGTAAAT
Length of connected seq. 1440
Full length Seq ID -
Full length Seq. -
Length of full length seq. -