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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC232
Library SL
(Link to library)
Clone ID SLC232
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16365-1
Original site URL
Representative seq. ID SLC232P
(Link to Original site)
Representative DNA sequence 
>SLC232 (SLC232Q) /CSM/SL/SLC2-B/SLC232Q.Seq.d/
ATAAATAATGAGACTCCTTTTAGTACTATTGGTACTAATTTTTAGTGTTGTTAGTGCTCA
ACAAAATACTTGCGCACAATTATGCAAAGATAATAAAGACATGTGTTGTTCATTATCAAA
AAATAGTGAATATTTATTAACAACACACAACAAAGAAGAAAAAACTCAATCATGTGGCGA
TAAATTCAATTCAGAAGATTATTATGTAGCAGGATCAAACCGTTTTGGTTGTGGTAACTC
TGTTACCATTTGTAAGGTACAATCAGATGACTCAAAGATTGAAATTACTCCAAATCGTAG
ATTTGGTCATCATGGTGGTGGCGTTGCTGGCTCAATTGCCAATGCCGCTTCATCAATTTC
TTCAGTTGCAAATTCAGTCTCATCAATGACTAATTCAGTTTCATCATTAGCAAATTCAGT
TTCATCATTAGCTGGTTCAATGTCATCATCAGGTTCATCATCATCATCAGGTTCATCAGG
TTCATCATCATCATCATCAGGTTCATCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGG
CGGTGGTGGTGGTTCAGGTTTAGTTGTTGGTAAAGAACGTAGATTTGGTAAACATGGTGG
TGGTGGTATTGCAGGTTCAATGAATTCAGCTGCAACCTCTTTXXXXXXXXXXCAGGTTCA
TCAAGTTCATCAGGTTCATCAGGTTCATCATCATCAGCTTCATCTTCAGGTTCATCAGGT
GGTAGCTCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGGTGGCGGTGGTGGTTCTGGA
TTAGTTGTTGGAGAACGTAAATTTGGTCATCACGGTGGTGGTGGTGTTGCTGGTTCAATC
GCTAATGCCGCTTCATCAATTGCCTCTGTTGCAAATTCAGTCTCATCAATGACCAATTCA
GTTTCATCATTAGCTAACTCAGTTTCATCATTAGCTGGTTCATCATCATCATCAGGTTCA
TCAGGTTCATCATCATCATCATCATCATCAGGTTCATCAGGTGGTTCATCAGGTGGTTCA
TCAGGTGGCGGTGGTGGTTCAGGTGAATTATTATCACAAAACCAAGTTTTCGCTACTTGT
GTTAGAGTTATTTCAACCAATGTTGGACCAAATGTTGATATTGAAGATAAAATTGGTAAA
CCAATTATGGATGCATCAACAAAAGTTTGCGAGGATCTCTTTGGATCACCATATTGTCAA
TGGACCGATAACCATATTGTTACTGCTGTTTCAAGCAAATTAGATGATGGTTTCCCAACT
CAAGGTGCATTCAATGTTACTCGTTCTCAATACGGTTACATCATGGAAAATGGCCATTAT
TTAAATAATAAAGGAAACTCTGTTAGAATTAATTAAATAAATAATATATTAAACTAAGAA
TATA
sequence update 1999. 1.11
Translated Amino Acid sequence 
*IMRLLLVLLVLIFSVVSAQQNTCAQLCKDNKDMCCSLSKNSEYLLTTHNKEEKTQSCGD
KFNSEDYYVAGSNRFGCGNSVTICKVQSDDSKIEITPNRRFGHHGGGVAGSIANAASSIS
SVANSVSSMTNSVSSLANSVSSLAGSMSSSGSSSSSGSSGSSSSSSGSSGGGSSGGGSGG
GGGGSGLVVGKERRFGKHGGGGIAGSMNSAATS---

---GSSSSSGSSGSSSSASSSGSSGGSSGGGSSGGGSGGGGGGSGLVVGERKFGHHGGGG
VAGSIANAASSIASVANSVSSMTNSVSSLANSVSSLAGSSSSSGSSGSSSSSSSSGSSGG
SSGGSSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVCEDLFG
SPYCQWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRIN*inn
iln*ey
Translated Amino Acid sequence (All Frames) 
Frame A:
innetpfstigtnf*cc*cstkylrtimqr**rhvlfiikk**ifinntqqrrknsimwr
*iqfrrllcsrikpfwlw*lcyhl*gtir*lkd*nysks*iwsswwwrcwlncqcrfinf
fsckfslind*fsfiiskfsfiiswfnviirfiiiirfirfiiiiirfirwwfirwwfrw
rwwwfrfscw*rt*iw*twwwwycrfnefscnlf---

---qvhqvhqvhqvhhhqlhlqvhqvvaqvvvhqvvvqvvavvvld*llenvnlvitvvv
vllvqslmplhqlpllqiqshq*piqfhh*ltqfhh*lvhhhhqvhqvhhhhhhhqvhqv
vhqvvhqvavvvqvnyyhktkfsllvlelfqpmldqmlilkiklvnqlwmhqqkfarisl
dhhivngpitillllfqan*mmvsqlkvhsmllvlntvtswkmaii*iiketllelik*i
iy*tkni

Frame B:
*IMRLLLVLLVLIFSVVSAQQNTCAQLCKDNKDMCCSLSKNSEYLLTTHNKEEKTQSCGD
KFNSEDYYVAGSNRFGCGNSVTICKVQSDDSKIEITPNRRFGHHGGGVAGSIANAASSIS
SVANSVSSMTNSVSSLANSVSSLAGSMSSSGSSSSSGSSGSSSSSSGSSGGGSSGGGSGG
GGGGSGLVVGKERRFGKHGGGGIAGSMNSAATS---

---rfikfirfirfiiisfifrfirw*lrwwfirwwfrwwrwwfwiscwrt*iwssrwww
ccwfnr*crfinclcckfslindqfsfiis*lsfiiswfiiiirfirfiiiiiiirfirw
firwfirwrwwfr*iiitkpsfrylc*syfnqcwtkc*y*r*nw*tnygcinkslrgslw
itilsmdr*pycyccfkqir*wfpnsrciqcysfsirlhhgkwplfk**rklc*n*lnk*
yiklri

Frame C:
k**dsf*yywy*flvllvlnkilahnyakiiktcvvhyqkivniy*qhttkkkklnhvai
nsiqkiim*qdqtvlvvvtllpfvrynqmtqrlkllqivdlvimvvallaqlpmplhqfl
qlqiqshq*liqfhh*qiqfhh*lvqchhqvhhhhqvhqvhhhhhqvhqvvvhqvvvqva
vvvvqv*llvknvdlvnmvvvvlqvq*iqlqpl---

---GSSSSSGSSGSSSSASSSGSSGGSSGGGSSGGGSGGGGGGSGLVVGERKFGHHGGGG
VAGSIANAASSIASVANSVSSMTNSVSSLANSVSSLAGSSSSSGSSGSSSSSSSSGSSGG
SSGGSSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVCEDLFG
SPYCQWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRIN*inn
iln*ey
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC232 (SLC232Q) /CSM/SL/SLC2-B/SLC232Q.Seq.d/                        833   0.0
VHQ412 (VHQ412Q) /CSM/VH/VHQ4-A/VHQ412Q.Seq.d/                        813   0.0
VFK151 (VFK151Q) /CSM/VF/VFK1-C/VFK151Q.Seq.d/                        813   0.0
VFK134 (VFK134Q) /CSM/VF/VFK1-B/VFK134Q.Seq.d/                        813   0.0
CFD637 (CFD637Q) /CSM/CF/CFD6-B/CFD637Q.Seq.d/                        813   0.0
AFM526 (AFM526Q) /CSM/AF/AFM5-B/AFM526Q.Seq.d/                        813   0.0
CHA751 (CHA751Q) /CSM/CH/CHA7-C/CHA751Q.Seq.d/                        805   0.0
SLF140 (SLF140Q) /CSM/SL/SLF1-B/SLF140Q.Seq.d/                        674   0.0
SLA329 (SLA329Q) /CSM/SL/SLA3-B/SLA329Q.Seq.d/                        672   0.0
SLC240 (SLC240Q) /CSM/SL/SLC2-B/SLC240Q.Seq.d/                        666   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060916) Dictyostelium discoideum slug cDNA, clone SLC232.      791   0.0    2
(BJ360875) Dictyostelium discoideum cDNA clone:ddc8i10, 5' e...   771   0.0    2
(BJ427641) Dictyostelium discoideum cDNA clone:ddv63h04, 5' ...   771   0.0    1
(BJ415136) Dictyostelium discoideum cDNA clone:ddv21e13, 5' ...   771   0.0    1
(BJ415046) Dictyostelium discoideum cDNA clone:ddv21c09, 5' ...   771   0.0    1
(BJ329777) Dictyostelium discoideum cDNA clone:dda26c07, 5' ...   771   0.0    1
(BJ362798) Dictyostelium discoideum cDNA clone:ddc23f13, 5' ...   763   0.0    1
(AU034184) Dictyostelium discoideum slug cDNA, clone SLC232.      545   0.0    2
(BJ399576) Dictyostelium discoideum cDNA clone:dds6f16, 3' e...   511   0.0    3
(BJ377085) Dictyostelium discoideum cDNA clone:ddc22f13, 3' ...   511   0.0    3
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M35) RecName: Full=Putative lysozyme-like protein; Flags: Pr...   212   2e-53
(Q8T1G4) RecName: Full=Lysozyme A;          EC=3.2.1.n1; AltName...    54   2e-05
protein update 2009. 1.21
PSORT 

 psg: 0.99  gvh: 0.94  alm: 0.41  top: 0.40  tms: 0.00  mit: 0.38  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SLC232 is exc
5' end seq. ID SLC232F
5' end seq. 
>SLC232F.Seq
ATAAATAATGAGACTCCTTTTAGTACTATTGGTACTAATTTTTAGTGTTGTTAGTGCTCA
ACAAAATACTTGCGCACAATTATGCAAAGATAATAAAGACATGTGTTGTTCATTATCAAA
AAATAGTGAATATTTATTAACAACACACAACAAAGAAGAAAAAACTCAATCATGTGGCGA
TAAATTCAATTCAGAAGATTATTATGTAGCAGGATCAAACCGTTTTGGTTGTGGTAACTC
TGTTACCATTTGTAAGGTACAATCAGATGACTCAAAGATTGAAATTACTCCAAATCGTAG
ATTTGGTCATCATGGTGGTGGCGTTGCTGGCTCAATTGCCAATGCCGCTTCATCAATTTC
TTCAGTTGCAAATTCAGTCTCATCAATGACTAATTCAGTTTCATCATTAGCAAATTCAGT
TTCATCATTAGCTGGTTCAATGTCATCATCAGGTTCATCATCATCATCAGGTTCATCAGG
TTCATCATCATCATCATCAGGTTCATCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGG
CGGTGGTGGTGGTTCAGGTTTAGTTGTTGGTAAAGAACGTAGATTTGGTAAACATGGTGG
TGGTGGTATTGCAGGTTCAATGAATTCAGCTGCAACCTCTTT----------
Length of 5' end seq. 642
3' end seq. ID SLC232Z
3' end seq. 
>SLC232Z.Seq
----------CAGGTTCATCAAGTTCATCAGGTTCATCAGGTTCATCATCATCAGCTTCA
TCTTCAGGTTCATCAGGTGGTAGCTCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGGT
GGCGGTGGTGGTTCTGGATTAGTTGTTGGAGAACGTAAATTTGGTCATCACGGTGGTGGT
GGTGTTGCTGGTTCAATCGCTAATGCCGCTTCATCAATTGCCTCTGTTGCAAATTCAGTC
TCATCAATGACCAATTCAGTTTCATCATTAGCTAACTCAGTTTCATCATTAGCTGGTTCA
TCATCATCATCAGGTTCATCAGGTTCATCATCATCATCATCATCATCAGGTTCATCAGGT
GGTTCATCAGGTGGTTCATCAGGTGGCGGTGGTGGTTCAGGTGAATTATTATCACAAAAC
CAAGTTTTCGCTACTTGTGTTAGAGTTATTTCAACCAATGTTGGACCAAATGTTGATATT
GAAGATAAAATTGGTAAACCAATTATGGATGCATCAACAAAAGTTTGCGAGGATCTCTTT
GGATCACCATATTGTCAATGGACCGATAACCATATTGTTACTGCTGTTTCAAGCAAATTA
GATGATGGTTTCCCAACTCAAGGTGCATTCAATGTTACTCGTTCTCAATACGGTTACATC
ATGGAAAATGGCCATTATTTAAATAATAAAGGAAACTCTGTTAGAATTAATTAAATAAAT
AATATATTAAACTAAGAATATA
Length of 3' end seq. 732
Connected seq. ID SLC232P
Connected seq. 
>SLC232P.Seq
ATAAATAATGAGACTCCTTTTAGTACTATTGGTACTAATTTTTAGTGTTGTTAGTGCTCA
ACAAAATACTTGCGCACAATTATGCAAAGATAATAAAGACATGTGTTGTTCATTATCAAA
AAATAGTGAATATTTATTAACAACACACAACAAAGAAGAAAAAACTCAATCATGTGGCGA
TAAATTCAATTCAGAAGATTATTATGTAGCAGGATCAAACCGTTTTGGTTGTGGTAACTC
TGTTACCATTTGTAAGGTACAATCAGATGACTCAAAGATTGAAATTACTCCAAATCGTAG
ATTTGGTCATCATGGTGGTGGCGTTGCTGGCTCAATTGCCAATGCCGCTTCATCAATTTC
TTCAGTTGCAAATTCAGTCTCATCAATGACTAATTCAGTTTCATCATTAGCAAATTCAGT
TTCATCATTAGCTGGTTCAATGTCATCATCAGGTTCATCATCATCATCAGGTTCATCAGG
TTCATCATCATCATCATCAGGTTCATCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGG
CGGTGGTGGTGGTTCAGGTTTAGTTGTTGGTAAAGAACGTAGATTTGGTAAACATGGTGG
TGGTGGTATTGCAGGTTCAATGAATTCAGCTGCAACCTCTTT----------CAGGTTCA
TCAAGTTCATCAGGTTCATCAGGTTCATCATCATCAGCTTCATCTTCAGGTTCATCAGGT
GGTAGCTCAGGTGGTGGTTCATCAGGTGGTGGTTCAGGTGGTGGCGGTGGTGGTTCTGGA
TTAGTTGTTGGAGAACGTAAATTTGGTCATCACGGTGGTGGTGGTGTTGCTGGTTCAATC
GCTAATGCCGCTTCATCAATTGCCTCTGTTGCAAATTCAGTCTCATCAATGACCAATTCA
GTTTCATCATTAGCTAACTCAGTTTCATCATTAGCTGGTTCATCATCATCATCAGGTTCA
TCAGGTTCATCATCATCATCATCATCATCAGGTTCATCAGGTGGTTCATCAGGTGGTTCA
TCAGGTGGCGGTGGTGGTTCAGGTGAATTATTATCACAAAACCAAGTTTTCGCTACTTGT
GTTAGAGTTATTTCAACCAATGTTGGACCAAATGTTGATATTGAAGATAAAATTGGTAAA
CCAATTATGGATGCATCAACAAAAGTTTGCGAGGATCTCTTTGGATCACCATATTGTCAA
TGGACCGATAACCATATTGTTACTGCTGTTTCAAGCAAATTAGATGATGGTTTCCCAACT
CAAGGTGCATTCAATGTTACTCGTTCTCAATACGGTTACATCATGGAAAATGGCCATTAT
TTAAATAATAAAGGAAACTCTGTTAGAATTAATTAAATAAATAATATATTAAACTAAGAA
TATA
Length of connected seq. 1374
Full length Seq ID -
Full length Seq. -
Length of full length seq. -