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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC221
Library SL
(Link to library)
Clone ID SLC221
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLC221Z
(Link to Original site)
Representative DNA sequence 
>SLC221 (SLC221Q) /CSM/SL/SLC2-A/SLC221Q.Seq.d/
XXXXXXXXXXAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGA
GAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTG
CCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAA
ATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGA
AAGCCAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTG
GTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAA
ATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTG
ATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACA
ATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATG
ATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAG
ATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATA
TTAATACAAATAATTTTTTAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---GYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPN
YHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAEN
ENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGND
WDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnnintnnflkkkkekkkkekk
Translated Amino Acid sequence (All Frames) 
Frame A:
---GYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPN
YHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAEN
ENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGND
WDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnnintnnflkkkkekkkkekk


Frame B:
---vmnvksnmmapnvvsrelqrdhvvnqihvpemknvlppktesfv*nqlviilvvlqi
tiayvviklmv*nvfqivrkpdvmmsnvqisidvlkdvvvs*vvnlihqdnqdpliglkm
kmmivtmmivtmmmmnmmvimmavtvtmmvimmvimmmtiimvmmtmimigtmimigvmi
gimigtmkmviigmmmtskmqmmngtikplif*kkiiiiliqiif*kkkkkkkkkkkk


Frame C:
---l*m*nqt*wlqmlcqensketml*tkfmcqr*kmcchqrqnhlcktnl**yslsskl
plhmw**n*wckmcsrl*esqm**crmsrfp*mc*ktwwylkl*i*stkttkip*lg*k*
k**s*l**s*l****i*w*l*wp*r*l*w*l*w*l***qllw***l***lgq***lg**l
g**lgq*rw**le***lprck**mgllsh*ffkkk***y*yk*ffkkkkrkkkkrkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC221 (SLC221Q) /CSM/SL/SLC2-A/SLC221Q.Seq.d/                        682   0.0
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        674   0.0
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        674   0.0
SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/                        674   0.0
SLB231 (SLB231Q) /CSM/SL/SLB2-B/SLB231Q.Seq.d/                        674   0.0
SLB168 (SLB168Q) /CSM/SL/SLB1-C/SLB168Q.Seq.d/                        674   0.0
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        674   0.0
SFL369 (SFL369Q) /CSM/SF/SFL3-C/SFL369Q.Seq.d/                        674   0.0
SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/                        674   0.0
SFL183 (SFL183Q) /CSM/SF/SFL1-D/SFL183Q.Seq.d/                        674   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034496) Dictyostelium discoideum slug cDNA, clone SLC221.      684   0.0    2
(BJ402024) Dictyostelium discoideum cDNA clone:dds20o04, 3' ...   676   0.0    2
(BJ375357) Dictyostelium discoideum cDNA clone:ddc18m08, 3' ...   676   0.0    2
(BJ374037) Dictyostelium discoideum cDNA clone:ddc6a09, 3' e...   676   0.0    2
(BJ375483) Dictyostelium discoideum cDNA clone:ddc18j23, 3' ...   676   0.0    2
(BJ372513) Dictyostelium discoideum cDNA clone:ddc12n20, 3' ...   676   0.0    2
(BJ400981) Dictyostelium discoideum cDNA clone:dds15n15, 3' ...   676   0.0    2
(BJ344208) Dictyostelium discoideum cDNA clone:dda18c22, 3' ...   676   0.0    2
(BJ343385) Dictyostelium discoideum cDNA clone:dda22l22, 3' ...   676   0.0    2
(AU034735) Dictyostelium discoideum slug cDNA, clone SLE255.      676   0.0    2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   271   1e-71
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    98   2e-19
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    97   4e-19
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    52   2e-05
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    52   2e-05
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    45   0.002
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.006
BC149826_1(BC149826|pid:none) Bos taurus keratin associated prot...    43   0.011
Z81110_2(Z81110|pid:none) Caenorhabditis elegans Cosmid T01D3, c...    43   0.011
T22945(T22945;T24295)hypothetical protein T01D3.1 - Caenorhabdit...    43   0.011
protein update 2009. 6. 1
PSORT 

 psg: 0.53  gvh: 0.42  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLC221 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC221Z
3' end seq. 
>SLC221Z.Seq
----------AGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGA
GAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTTG
CCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCAA
ATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAGA
AAGCCAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGTG
GTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAA
ATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTG
ATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACA
ATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATG
ATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAG
ATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATA
TTAATACAAATAATTTTTTAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAA
Length of 3' end seq. 707
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -