SLC218
Library SL
(Link to library)
Clone ID SLC218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SLC218E
(Link to Original site)
Representative DNA sequence
>SLC218 (SLC218Q) /CSM/SL/SLC2-A/SLC218Q.Seq.d/
CAATTAATGGCTCTGTTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTAT
GGAGTGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCA
ATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACT
ATAACTTTTTGCGCCATGGTCTTAGGTGTTANNNNNNAGTTCATCAAGCTTGTCTAGATC
ATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATG
GTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCA
ATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTC
TACCAAACTTACCNGANATTGTAGTTCAAAGNGTNTTAATTAGACATGGTTTCAGTCATG
ATATGGCAATGCTCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGATAAACATC
CAATGGTTCAAAGTATTTCAAAAGATGAAGGTCAATCATTCCATCATTAAAATTAAAAAA
AAAAAATAAAAAAAAAAGCATCAATAATTAATAATTAATCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 7.13
Translated Amino Acid sequence
INGSVHKFGLSPLGVGWVVWSGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYY
NFLRHGLRCXXXVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFN
LFDLSDRMRNRGWQIASYTLPNLPXIVVQXVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP
MVQSISKDEGQSFHH*n*kkkikkkasiinn*skkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
qlmalfinlvylhwelagsygvvkmtftriwysmstilvaicqhfh*ishvqvvk*yast
itfcamvlgvxxxfiklv*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*ns
isltfqie*eievgklhpilyqtyxxl*fkxx*ldmvsvmiwqcs*lkisivvlnilini
qwfkvfqkmkvnhsiikikkkk*kkkhq*liinpkkkkkkkkkkkkkkkkkkk


Frame B:
n*wlcs*iwsisigswlgrmew*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl
*lfapws*vlxxsssslsrswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiq
sl*pfr*nek*rlancilystkltxxcsskxxn*twfqs*ygnaln*rfqs*y*if**ts
ngskyfkr*rsiipslklkkknkkksinn**liqkkkkkkkkkkkkkkkkkkk


Frame C:
INGSVHKFGLSPLGVGWVVWSGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYY
NFLRHGLRCXXXVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFN
LFDLSDRMRNRGWQIASYTLPNLPXIVVQXVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP
MVQSISKDEGQSFHH*n*kkkikkkasiinn*skkkkkkkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC218 (SLC218Q) /CSM/SL/SLC2-A/SLC218Q.Seq.d/ 1118 0.0
SSF452 (SSF452Q) /CSM/SS/SSF4-C/SSF452Q.Seq.d/ 1070 0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/ 1070 0.0
SLH288 (SLH288Q) /CSM/SL/SLH2-D/SLH288Q.Seq.d/ 1070 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 1070 0.0
SSF349 (SSF349Q) /CSM/SS/SSF3-C/SSF349Q.Seq.d/ 1063 0.0
SSC841 (SSC841Q) /CSM/SS/SSC8-B/SSC841Q.Seq.d/ 1063 0.0
SLB349 (SLB349Q) /CSM/SL/SLB3-C/SLB349Q.Seq.d/ 1063 0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/ 1039 0.0
SFG506 (SFG506Q) /CSM/SF/SFG5-A/SFG506Q.Seq.d/ 1035 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039255) Dictyostelium discoideum slug cDNA, clone SLH288. 724 0.0 2
(C84710) Dictyostelium discoideum slug cDNA, clone SSE705. 724 0.0 2
(C92830) Dictyostelium discoideum slug cDNA, clone SSF452. 724 0.0 2
(AU034007) Dictyostelium discoideum slug cDNA, clone SLB722. 724 0.0 2
(AU051981) Dictyostelium discoideum slug cDNA, clone SSC841. 724 0.0 2
(C92791) Dictyostelium discoideum slug cDNA, clone SSF349. 716 0.0 2
(AU033714) Dictyostelium discoideum slug cDNA, clone SLB349. 716 0.0 2
(AU060911) Dictyostelium discoideum slug cDNA, clone SLC218. 674 0.0 2
(BJ401761) Dictyostelium discoideum cDNA clone:dds19f12, 3' ... 668 0.0 3
(BJ377938) Dictyostelium discoideum cDNA clone:ddc26b13, 3' ... 622 0.0 3
dna update 2009. 2.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 245 1e-63
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 243 4e-63
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 239 6e-62
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 233 4e-60
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 230 4e-59
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 229 6e-59
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 226 4e-58
AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ... 216 7e-55
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 202 8e-51
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 202 8e-51
protein update 2009. 7. 4
PSORT

psg: 0.92 gvh: 0.47 alm: 0.43 top: 0.43 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for SLC218 is nuc

5' end seq. ID SLC218F
5' end seq.
>SLC218F.Seq
CAATTAATGGCTCTGTTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTAT
GGAGTGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCA
ATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACT
ATAACTTTTTGCGCCATGGTCTTAGGTGTTANNNNNNAGTTCATCAAGCTTGTCTAGATC
ATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATG
GTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCA
ATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTC
TACCAAACTTACCAGACATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATG
ATATGGCAATGCTCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGATAAACATC
CAATGGTTCAAAGTATTTCAAAAGATGAA----------
Length of 5' end seq. 569
3' end seq. ID SLC218Z
3' end seq.
>SLC218Z.Seq
----------CCAAACTTACCCGATATTGTAGTTCAAAGGGTTTTAATTAGACATGGTTT
CAGTCATGATATGGCAATGCTCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGA
TAAACATCCAATGGTTCAAAGTATTTCAAAAGATGAAGGTCAATCATTCCATCATTAAAA
TTAAAAAAAAAAAATAAAAAAAAAAGCATCAATAATTAATAATTAATCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 279
Connected seq. ID SLC218P
Connected seq.
>SLC218P.Seq
CAATTAATGGCTCTGTTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTAT
GGAGTGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCA
ATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACT
ATAACTTTTTGCGCCATGGTCTTAGGTGTTANNNNNNAGTTCATCAAGCTTGTCTAGATC
ATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATG
GTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCA
ATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTC
TACCAAACTTACCAGACATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATG
ATATGGCAATGCTCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGATAAACATC
CAATGGTTCAAAGTATTTCAAAAGATGAA----------CCAAACTTACCCGATATTGTA
GTTCAAAGGGTTTTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAA
GATTTCAATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAA
GATGAAGGTCAATCATTCCATCATTAAAATTAAAAAAAAAAAATAAAAAAAAAAGCATCA
ATAATTAATAATTAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
Length of connected seq. 848
Full length Seq ID SLC218E
Full length Seq.
>SLC218E.Seq
CAATTAATGGCTCTGTTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTAT
GGAGTGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCA
ATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACT
ATAACTTTTTGCGCCATGGTCTTAGGTGTTANNNNNNAGTTCATCAAGCTTGTCTAGATC
ATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATG
GTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCA
ATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTC
TACCAAACTTACCNGANATTGTAGTTCAAAGNGTNTTAATTAGACATGGTTTCAGTCATG
ATATGGCAATGCTCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGATAAACATC
CAATGGTTCAAAGTATTTCAAAAGATGAAGGTCAATCATTCCATCATTAAAATTAAAAAA
AAAAAATAAAAAAAAAAGCATCAATAATTAATAATTAATCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 701