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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC215
Library SL
(Link to library)
Clone ID SLC215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11723-1
Original site URL
Representative seq. ID SLC215F
(Link to Original site)
Representative DNA sequence 
>SLC215 (SLC215Q) /CSM/SL/SLC2-A/SLC215Q.Seq.d/
CAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGG
TTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATCTTCAA
CTACCACTACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTCTCGAAGAAA
GTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTTTTCTTTTGTTTTGATGAAGATAACT
CTGTTAAATTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAAT
TAAAAAGATTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAAT
CAATGAAATTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAAT
AATAAXXXXXXXXXX
sequence update 1999. 1.11
Translated Amino Acid sequence 
KTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKSSTTTTKSPEKTIIELKRSLEES
GLFTKKKGPYLFFCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKDICTELVES
MKL*vff*kknk***iikk*---
Translated Amino Acid sequence (All Frames) 
Frame A:
qkree*v*ihvc*mvinnhwlkriniwqvqelrkvylnlqlpllnhqrkqlsn*kdlskk
vvyslkrkvltfsfvlmkitllnfkskslkfvtli*lvfn*kd*vailgnikifvln*ln
q*nykfffkkkinsnk**knn---


Frame B:
kneknefrftyvkw*stiig*kestygksknferyi*ifnyhy*itrennyriekisrrk
wfih*kerslpfllf**r*lc*isnrnr*nl*p*fnwysikkikwrylei*ryly*is*i
neiisfflkkk*ivinnkkii---


Frame C:
KTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKSSTTTTKSPEKTIIELKRSLEES
GLFTKKKGPYLFFCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKDICTELVES
MKL*vff*kknk***iikk*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC215 (SLC215Q) /CSM/SL/SLC2-A/SLC215Q.Seq.d/                        743   0.0
CHN147 (CHN147Q) /CSM/CH/CHN1-B/CHN147Q.Seq.d/                        729   0.0
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                        718   0.0
CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                        718   0.0
CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/                        718   0.0
CHN820 (CHN820Q) /CSM/CH/CHN8-A/CHN820Q.Seq.d/                        710   0.0
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                        700   0.0
CHH704 (CHH704Q) /CSM/CH/CHH7-A/CHH704Q.Seq.d/                        694   0.0
CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/                        670   0.0
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                        615   e-175
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060910) Dictyostelium discoideum slug cDNA, clone SLC215.      759   0.0    1
(BJ384147) Dictyostelium discoideum cDNA clone:ddc48m11, 3' ...   745   0.0    1
(BJ386027) Dictyostelium discoideum cDNA clone:ddc56m23, 3' ...   733   0.0    1
(BJ384891) Dictyostelium discoideum cDNA clone:ddc51i03, 3' ...   733   0.0    1
(BJ379039) Dictyostelium discoideum cDNA clone:ddc33h15, 3' ...   733   0.0    1
(BJ384337) Dictyostelium discoideum cDNA clone:ddc49h06, 3' ...   726   0.0    1
(BJ380123) Dictyostelium discoideum cDNA clone:ddc37h01, 3' ...   710   0.0    1
(BJ383440) Dictyostelium discoideum cDNA clone:ddc53d04, 3' ...   698   0.0    1
(BJ380468) Dictyostelium discoideum cDNA clone:ddc38c09, 3' ...   666   0.0    2
(BJ384875) Dictyostelium discoideum cDNA clone:ddc51e02, 3' ...   605   e-169  1
dna update 2009. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DF2) RecName: Full=Probable serine/threonine-protein kinase ...    57   1e-07
(Q54MV2) RecName: Full=Probable serine/threonine-protein kinase ...    55   6e-07
CU633895_369(CU633895|pid:none) Podospora anserina genomic DNA c...    49   4e-05
CR380948_76(CR380948|pid:none) Candida glabrata strain CBS138 ch...    48   9e-05
M69017_1(M69017|pid:none) S.cerevisiae protein kinase 1 gene, co...    48   1e-04
(P13185) RecName: Full=Protein kinase KIN1;          EC=2.7.11.1...    48   1e-04
BX908811_19(BX908811|pid:none) Neurospora crassa DNA linkage gro...    48   1e-04
CR380959_496(CR380959|pid:none) Candida glabrata strain CBS138 c...    47   2e-04
BC043730_1(BC043730|pid:none) Xenopus laevis MAP/microtubule aff...    45   8e-04
AB071963_1(AB071963|pid:none) Xenopus laevis MARK2 mRNA for seri...    45   8e-04
protein update 2009. 6. 1
PSORT 

 psg: 0.60  gvh: 0.26  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLC215 is nuc
5' end seq. ID SLC215F
5' end seq. 
>SLC215F.Seq
CAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGG
TTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATCTTCAA
CTACCACTACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTCTCGAAGAAA
GTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTTTTCTTTTGTTTTGATGAAGATAACT
CTGTTAAATTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAAT
TAAAAAGATTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAAT
CAATGAAATTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAAT
AATAA----------
Length of 5' end seq. 425
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -