NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC207
Library SL
(Link to library)
Clone ID SLC207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLC207E
(Link to Original site)
Representative DNA sequence 
>SLC207 (SLC207Q) /CSM/SL/SLC2-A/SLC207Q.Seq.d/
GGTGTACCACAAGTTGAAGTTCCATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATATAGTACACATTAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
GVPQVEVPFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQD
EQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEK
DEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfsee
nisik*is*kiis**nq*sfsyivhikkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
GVPQVEVPFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQD
EQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEK
DEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfsee
nisik*is*kiis**nq*sfsyivhikkkkkk


Frame B:
vyhklkfhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkm
nnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkr
mnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrk
tslsnrflkk**vskinkashi*ytlkkkkkk


Frame C:
ctts*ssi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*
ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg
*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgk
hlyqidflknnklvksiklliysth*kkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC207 (SLC207Q) /CSM/SL/SLC2-A/SLC207Q.Seq.d/                       1225   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                       1217   0.0
VFL101 (VFL101Q) /CSM/VF/VFL1-A/VFL101Q.Seq.d/                       1217   0.0
SSE694 (SSE694Q) /CSM/SS/SSE6-D/SSE694Q.Seq.d/                       1217   0.0
SLH812 (SLH812Q) /CSM/SL/SLH8-A/SLH812Q.Seq.d/                       1217   0.0
SLC111 (SLC111Q) /CSM/SL/SLC1-A/SLC111Q.Seq.d/                       1217   0.0
CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/                       1217   0.0
CHS205 (CHS205Q) /CSM/CH/CHS2-A/CHS205Q.Seq.d/                       1217   0.0
CHQ771 (CHQ771Q) /CSM/CH/CHQ7-C/CHQ771Q.Seq.d/                       1217   0.0
CHK667 (CHK667Q) /CSM/CH/CHK6-C/CHK667Q.Seq.d/                       1217   0.0
own update 2003. 6.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034485) Dictyostelium discoideum slug cDNA, clone SLC207.     1225   0.0    1
(X75263) D.discoideum (AX3) mRNA for heat shock cognate prot...  1217   0.0    1
(AU039449) Dictyostelium discoideum slug cDNA, clone SLH812.     1217   0.0    1
(AU034156) Dictyostelium discoideum slug cDNA, clone SLC111.     1217   0.0    1
(C92565) Dictyostelium discoideum slug cDNA, clone SSE694.       1217   0.0    1
(BJ446063) Dictyostelium discoideum cDNA clone:ddv61c18, 3' ...  1217   0.0    1
(BJ433801) Dictyostelium discoideum cDNA clone:ddv23a01, 3' ...  1217   0.0    1
(BJ386592) Dictyostelium discoideum cDNA clone:ddc58b22, 3' ...  1217   0.0    1
(BJ386397) Dictyostelium discoideum cDNA clone:ddc58i02, 3' ...  1217   0.0    1
(BJ385656) Dictyostelium discoideum cDNA clone:ddc55n17, 3' ...  1217   0.0    1
dna update 2009. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   275   8e-73
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   275   8e-73
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   187   3e-46
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   185   1e-45
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           184   2e-45
AY253326_1(AY253326|pid:none) Nicotiana tabacum heat shock prote...   183   4e-45
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   182   7e-45
AC147536_23(AC147536|pid:none) Medicago truncatula clone mth2-9l...   182   7e-45
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1;  &FB...   182   7e-45
AY830127_1(AY830127|pid:none) Medicago sativa heat shock protein...   182   7e-45
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC207 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC207E
Full length Seq. 
>SLC207E.Seq
GGTGTACCACAAGTTGAAGTTCCATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATATAGTACACATTAAAAAAAAAAAAAAAAAAA
Length of full length seq. 637