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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC202
Library SL
(Link to library)
Clone ID SLC202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16478-1
Original site URL
Representative seq. ID SLC202Z
(Link to Original site)
Representative DNA sequence 
>SLC202 (SLC202Q) /CSM/SL/SLC2-A/SLC202Q.Seq.d/
XXXXXXXXXXTTGCGCTGGTGCAGGTACCAACGAGAACACTATAATTGAAATTTTAGTTA
CCCGTAGTAATGTACAAATGGAATACATTAAACAAATCTTCAGGAATAAACATGGTAAAT
CATTAAAAGATCGTCTTGAATCCGAAGCAAGTGGTGACTTTAAGAAATTATTAGAGAAAC
TCACTGAACCAAGAGATGAATCACCAGTCATCAACCCAATGCAAGTTTCAAAAGATGCTG
AAGATCTCTACAAAGCTGGTGAAGGTAAAATTGGTACCGACGAAAAGGAATTCATCAAAA
TTCTCACCTCTCGTTCATTACCACATATTGCTGCCGTCGCTAGTGAATACATTAAACATC
ACAAAAAACACTCACTCATCAAAGCAATCGATTCTGAATTCTCTGGTTCAATTAAAACTG
GTTTAATCGCTATCGTTACCTATGCTCTCAACCCATATGGTTATTTCGCTGAAATCTTAA
ACAAATCAATGAAAGGTGCTGGTACAAATGATAACAAACTCATTCGTACTGTTGTAACTC
AAATGCACAATATGCCACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTCATTAG
CTCATGATATTCAAGCTGATTGTAGTGGTGATTTCAAAAAATTATTATTAGATATTATCT
CATAAAATAATAATTTTCCAT
sequence update 1998. 4.23
Translated Amino Acid sequence 
---CAGAGTNENTIIEILVTRSNVQMEYIKQIFRNKHGKSLKDRLESEASGDFKKLLEKL
TEPRDESPVINPMQVSKDAEDLYKAGEGKIGTDEKEFIKILTSRSLPHIAAVASEYIKHH
KKHSLIKAIDSEFSGSIKTGLIAIVTYALNPYGYFAEILNKSMKGAGTNDNKLIRTVVTQ
MHNMPQIKTAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*nnnfp
Translated Amino Acid sequence (All Frames) 
Frame A:
---CAGAGTNENTIIEILVTRSNVQMEYIKQIFRNKHGKSLKDRLESEASGDFKKLLEKL
TEPRDESPVINPMQVSKDAEDLYKAGEGKIGTDEKEFIKILTSRSLPHIAAVASEYIKHH
KKHSLIKAIDSEFSGSIKTGLIAIVTYALNPYGYFAEILNKSMKGAGTNDNKLIRTVVTQ
MHNMPQIKTAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*nnnfp


Frame B:
---alvqvptrtl*lkf*lpvvmykwntlnkssginmvnh*kivlnpkqvvtlrny*rns
lnqemnhqsstqckfqkmlkistklvkvklvptkrnsskfsplvhyhillpslvntlnit
knthsskqsilnslvqlklv*slslpmlsthmvislks*tnq*kvlvqmitnsfvll*lk
ctichklklliqlssrih*lmifklivvvisknyy*ilshkiiifh


Frame C:
---rwcryqrehyn*nfsyp**ctngih*tnlqe*tw*iikrss*irskw*l*eiireth
*tkr*itshqpnasfkrc*rslqsw*r*nwyrrkgihqnshlsfittyccrr**ih*tsq
ktlthqsnrf*ilwfn*nwfnryrylcsqpiwlfr*nlkqinercwyk**qthsyccnsn
aqyatn*nclfnslqefiss*yss*l*w*fqkiiiryylik**fs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC202 (SLC202Q) /CSM/SL/SLC2-A/SLC202Q.Seq.d/                       1330   0.0
SLH871 (SLH871Q) /CSM/SL/SLH8-C/SLH871Q.Seq.d/                       1322   0.0
SLH384 (SLH384Q) /CSM/SL/SLH3-D/SLH384Q.Seq.d/                       1322   0.0
SLA785 (SLA785Q) /CSM/SL/SLA7-D/SLA785Q.Seq.d/                       1322   0.0
SLH791 (SLH791Q) /CSM/SL/SLH7-D/SLH791Q.Seq.d/                       1314   0.0
SLH343 (SLH343Q) /CSM/SL/SLH3-B/SLH343Q.Seq.d/                       1271   0.0
VFL667 (VFL667Q) /CSM/VF/VFL6-C/VFL667Q.Seq.d/                       1241   0.0
VFC171 (VFC171Q) /CSM/VF/VFC1-C/VFC171Q.Seq.d/                       1231   0.0
VFH585 (VFH585Q) /CSM/VF/VFH5-D/VFH585Q.Seq.d/                       1219   0.0
VFI545 (VFI545Q) /CSM/VF/VFI5-B/VFI545Q.Seq.d/                       1195   0.0
own update 2004. 7.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034480) Dictyostelium discoideum slug cDNA, clone SLC202.     1330   0.0    1
(AU039987) Dictyostelium discoideum slug cDNA, clone SLH384.     1322   0.0    1
(AU039522) Dictyostelium discoideum slug cDNA, clone SLA785.     1322   0.0    1
(AU039484) Dictyostelium discoideum slug cDNA, clone SLH871.     1322   0.0    1
(X60270) D.discoideum DdANN7 mRNA for annexin VII, partial cds.  1314   0.0    1
(AU039440) Dictyostelium discoideum slug cDNA, clone SLH791.     1314   0.0    1
(M69022) D.discoideum annexin VII (synexin) mRNA, complete cds.  1291   0.0    1
(AU039282) Dictyostelium discoideum slug cDNA, clone SLH343.     1271   0.0    1
(BJ429994) Dictyostelium discoideum cDNA clone:ddv5m17, 3' e...  1231   0.0    1
(BJ434650) Dictyostelium discoideum cDNA clone:ddv24e18, 3' ...  1203   0.0    2
dna update 2009. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P24639) RecName: Full=Annexin A7; AltName: Full=Annexin-7; AltN...   427   e-118
M69022_1(M69022|pid:none) D.discoideum annexin VII (synexin) mRN...   427   e-118
BT059478_1(BT059478|pid:none) Salmo salar clone ssal-rgf-513-011...   171   2e-41
BC068035_1(BC068035|pid:none) Xenopus tropicalis annexin A7, mRN...   170   3e-41
BC053208_1(BC053208|pid:none) Danio rerio annexin A11a, mRNA (cD...   165   1e-39
BX323467_3(BX323467|pid:none) Zebrafish DNA sequence from clone ...   165   1e-39
AY178801_1(AY178801|pid:none) Danio rerio annexin 11a mRNA, comp...   165   1e-39
(P26256) RecName: Full=Annexin-B12; AltName: Full=Annexin-12; Al...   165   1e-39
BT058891_1(BT058891|pid:none) Salmo salar clone ssal-rgf-511-242...   164   2e-39
FJ803366_1(FJ803366|pid:none) Ictalurus punctatus annexin A11 mR...   163   5e-39
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLC202 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC202Z
3' end seq. 
>SLC202Z.Seq
----------TTGCGCTGGTGCAGGTACCAACGAGAACACTATAATTGAAATTTTAGTTA
CCCGTAGTAATGTACAAATGGAATACATTAAACAAATCTTCAGGAATAAACATGGTAAAT
CATTAAAAGATCGTCTTGAATCCGAAGCAAGTGGTGACTTTAAGAAATTATTAGAGAAAC
TCACTGAACCAAGAGATGAATCACCAGTCATCAACCCAATGCAAGTTTCAAAAGATGCTG
AAGATCTCTACAAAGCTGGTGAAGGTAAAATTGGTACCGACGAAAAGGAATTCATCAAAA
TTCTCACCTCTCGTTCATTACCACATATTGCTGCCGTCGCTAGTGAATACATTAAACATC
ACAAAAAACACTCACTCATCAAAGCAATCGATTCTGAATTCTCTGGTTCAATTAAAACTG
GTTTAATCGCTATCGTTACCTATGCTCTCAACCCATATGGTTATTTCGCTGAAATCTTAA
ACAAATCAATGAAAGGTGCTGGTACAAATGATAACAAACTCATTCGTACTGTTGTAACTC
AAATGCACAATATGCCACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTCATTAG
CTCATGATATTCAAGCTGATTGTAGTGGTGATTTCAAAAAATTATTATTAGATATTATCT
CATAAAATAATAATTTTCCAT
Length of 3' end seq. 671
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -