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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC201
Library SL
(Link to library)
Clone ID SLC201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLC201E
(Link to Original site)
Representative DNA sequence 
>SLC201 (SLC201Q) /CSM/SL/SLC2-A/SLC201Q.Seq.d/
AACCAACTCATAGACCAAAACCACCACACCATGGTTGTCGTCCAGATAGTTGCGCTAGAG
GTGAGAAATGTATCTGTGTACGTGGTAAGATCTATTGTATTCCAAAGACCACCTGTGATC
AAGTACGTTGTCCAAGAAAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTG
TTCCAGATTGTCCAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCG
TTTCAAGACGTGGTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTG
ATGATCTCTCAGATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATG
AAGCCCAAAGGGGTCAAAGACCACATAATAATATTCCATCAAACAATTTACATCAAGAAA
ACAATGATAATTTGGGTGATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAG
GTTTCGACGTAAACGATCTCAATGGTTTTT
sequence update 1998. 4.23
Translated Amino Acid sequence 
PTHRPKPPHHGCRPDSCARGEKCICVRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCV
PDCPKLTCKQVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYE
AQRGQRPHNNIPSNNLHQENNDNLGDGFYDGVEIGFADGGFDVNDLNGF
Translated Amino Acid sequence (All Frames) 
Frame A:
nqlidqnhhtmvvvqivalevrnvsvyvvrsivfqrppvikyvvqentivnaiekvkfsv
fqivqn*lvnklvaqktmnafqdvvnsivytldhqqvdgvmisqi*vtikqvlklqlmlm
kpkgvkdhiiifhqtiyikktmiiwvmvfmmvlklvsltevst*tismvf


Frame B:
tns*tktttpwlssr*lr*r*emylctw*dllyskdhl*sstlskktpl*mq*krssflc
srlskinl*tswlprkp*mrfktw*tplcir*ttnr*mg**slrfrlqsskc*scn*cl*
spkgsktt**ysikqftsrkq**fg*wfl*wc*nwfr*rrfrrkrsqwf


Frame C:
PTHRPKPPHHGCRPDSCARGEKCICVRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCV
PDCPKLTCKQVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYE
AQRGQRPHNNIPSNNLHQENNDNLGDGFYDGVEIGFADGGFDVNDLNGF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI883 (SLI883Q) /CSM/SL/SLI8-D/SLI883Q.Seq.d/                       1011   0.0
SLI370 (SLI370Q) /CSM/SL/SLI3-C/SLI370Q.Seq.d/                       1011   0.0
SLG187 (SLG187Q) /CSM/SL/SLG1-D/SLG187Q.Seq.d/                       1011   0.0
SLE234 (SLE234Q) /CSM/SL/SLE2-B/SLE234Q.Seq.d/                       1011   0.0
SLE215 (SLE215Q) /CSM/SL/SLE2-A/SLE215Q.Seq.d/                       1011   0.0
SLC695 (SLC695Q) /CSM/SL/SLC6-D/SLC695Q.Seq.d/                       1011   0.0
SLC649 (SLC649Q) /CSM/SL/SLC6-C/SLC649Q.Seq.d/                       1011   0.0
SLC537 (SLC537Q) /CSM/SL/SLC5-B/SLC537Q.Seq.d/                       1011   0.0
SLC364 (SLC364Q) /CSM/SL/SLC3-C/SLC364Q.Seq.d/                       1011   0.0
SLC209 (SLC209Q) /CSM/SL/SLC2-A/SLC209Q.Seq.d/                       1011   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF066071) Dictyostelium discoideum SP85 (pspB) gene, comple...  1011   0.0    1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...  1011   0.0    1
(AU053547) Dictyostelium discoideum slug cDNA, clone SLI883.     1011   0.0    1
(AU053311) Dictyostelium discoideum slug cDNA, clone SLI370.     1011   0.0    1
(AU052289) Dictyostelium discoideum slug cDNA, clone SLA746.     1011   0.0    1
(AU039689) Dictyostelium discoideum slug cDNA, clone SLG187.     1011   0.0    1
(AU039504) Dictyostelium discoideum slug cDNA, clone SLA756.     1011   0.0    1
(AU034719) Dictyostelium discoideum slug cDNA, clone SLE234.     1011   0.0    1
(AU034705) Dictyostelium discoideum slug cDNA, clone SLE215.     1011   0.0    1
(AU034625) Dictyostelium discoideum slug cDNA, clone SLC649.     1011   0.0    1
dna update 2009. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   384   e-106
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   253   2e-66
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    95   9e-19
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    62   8e-09
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    55   1e-06
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        52   6e-06
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    52   8e-06
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    52   8e-06
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    49   5e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    49   9e-05
protein update 2009. 7. 4
PSORT 

 psg: 0.59  gvh: 0.29  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC201 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC201E
Full length Seq. 
>SLC201E.Seq
AACCAACTCATAGACCAAAACCACCACACCATGGTTGTCGTCCAGATAGTTGCGCTAGAG
GTGAGAAATGTATCTGTGTACGTGGTAAGATCTATTGTATTCCAAAGACCACCTGTGATC
AAGTACGTTGTCCAAGAAAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTG
TTCCAGATTGTCCAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCG
TTTCAAGACGTGGTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTG
ATGATCTCTCAGATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATG
AAGCCCAAAGGGGTCAAAGACCACATAATAATATTCCATCAAACAATTTACATCAAGAAA
ACAATGATAATTTGGGTGATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAG
GTTTCGACGTAAACGATCTCAATGGTTTTT
Length of full length seq. 510