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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC195
Library SL
(Link to library)
Clone ID SLC195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13989-1
Original site URL
Representative seq. ID SLC195Z
(Link to Original site)
Representative DNA sequence 
>SLC195 (SLC195Q) /CSM/SL/SLC1-D/SLC195Q.Seq.d/
XXXXXXXXXXGGTGTGTTGATGTATGGTCCACCAGGTACTGGTAAGACATTGTGTGCTCG
TGCCGTTGCAAATCGTACTGATGCCGCTTTTGTTCGTGTTATTGGTTCAGAGTTGGTGCA
AAAGTATGTTGGTGAGGGTGCACGTATGGTACGTGATCTCTTTCAAATGGCACGTTCAAA
GAAGGCATGTATTATCTTTTTCGATGAAGTTGATGCAATTGGTGGTGCTCGTTTCGATGA
TGGTGCAGGCGGTGACAATGAGGTTCAACGTACTATGTTAGAGTTGATCAATCAATTGGA
TGGTTTCGATCCACGTGGTAACATTAAAGTATTGATGGCAACCAATCGTCCAGATACTTT
GGATCCAGCTCTTCTTCGTCCAGGTCGTCTCGATCGTAAGGTTGAATTTGGTTTACCAGA
CTTGGAGGGTCGTGCTCACATCTTTACCATTCATGCCAAAACTATGAGCTGTGCTCGTGA
TATTCGTTTCGAATTATTGGCTCGTCTTTGTCCAAACTCAACTGGTGCCGATATTAGATC
CGTTTGTACCGAAGCTGGTATGTTTGCAATTCGTGCTCGTAGAAAGGTTGTAAGTGAAAA
AGACTTTTTAGAAGCTATTGATAAAGTTATTAAATCTTATGCTAAATTTAGTGCAACTTC
AAGATATATGCATTATAATTAAATTTTTTTAAAAAAAAAAAAAAAAATTTTATATATATT
TCAT
sequence update 1998. 4.23
Translated Amino Acid sequence 
---VLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKK
ACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD
PALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSV
CTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYAKFSATSRYMHYN*iflkkkkkilyifh
Translated Amino Acid sequence (All Frames) 
Frame A:
---vc*cmvhqvlvrhcvlvplqivlmpllfvllvqswcksmlvrvhvwyvisfkwhvqr
rhvlsfsmklmqlvvlvsmmvqavtmrfnvlc*s*sinwmvsihvvtlky*wqpivqilw
iqlffvqvvsivrlnlvyqtwrvvltslpfmpkl*avlvifvsnywlvfvqtqlvpildp
fvpklvclqfvlverl*vkktf*kllikllnlmlnlvqlqdiciiikff*kkkkkfyiyf


Frame B:
---cvdvwstryw*divcscrcksy*crfcscywfrvgakvcw*gctygt*slsngtfke
gmyylfr*s*cnwwcsfr*wcrr*q*gstyyvrvdqsigwfrstw*h*sidgnqssryfg
ssssssrssrs*g*iwftrlggscshlyhscqnyelcs*ysfriigsslsklnwcry*ir
lyrswyvcnscs*kgck*krlfrsy**sy*ilc*i*cnfkiyal*lnffkkkkknfiyis


Frame C:
---VLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKK
ACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD
PALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSV
CTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYAKFSATSRYMHYN*iflkkkkkilyifh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC195 (SLC195Q) /CSM/SL/SLC1-D/SLC195Q.Seq.d/                       1348   0.0
SLE614 (SLE614Q) /CSM/SL/SLE6-A/SLE614Q.Seq.d/                       1312   0.0
SSJ208 (SSJ208Q) /CSM/SS/SSJ2-A/SSJ208Q.Seq.d/                       1310   0.0
VFC836 (VFC836Q) /CSM/VF/VFC8-B/VFC836Q.Seq.d/                       1263   0.0
AFO781 (AFO781Q) /CSM/AF/AFO7-D/AFO781Q.Seq.d/                       1249   0.0
AFO830 (AFO830Q) /CSM/AF/AFO8-B/AFO830Q.Seq.d/                       1225   0.0
AFL672 (AFL672Q) /CSM/AF/AFL6-C/AFL672Q.Seq.d/                       1225   0.0
AFN448 (AFN448Q) /CSM/AF/AFN4-B/AFN448Q.Seq.d/                       1201   0.0
SFD763 (SFD763Q) /CSM/SF/SFD7-C/SFD763Q.Seq.d/                       1195   0.0
SFL468 (SFL468Q) /CSM/SF/SFL4-C/SFL468Q.Seq.d/                       1164   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116987) Dictyostelium discoideum chromosome 2 map 3527441...  1344   0.0    2
(AU034477) Dictyostelium discoideum slug cDNA, clone SLC195.     1344   0.0    2
(AU034866) Dictyostelium discoideum slug cDNA, clone SLE614.     1312   0.0    2
(BJ346383) Dictyostelium discoideum cDNA clone:dda30b21, 3' ...  1241   0.0    1
(BJ430177) Dictyostelium discoideum cDNA clone:ddv6h10, 3' e...  1229   0.0    2
(BJ347565) Dictyostelium discoideum cDNA clone:dda27p12, 3' ...  1197   0.0    1
(BJ346267) Dictyostelium discoideum cDNA clone:dda30l08, 3' ...  1193   0.0    3
(BJ400063) Dictyostelium discoideum cDNA clone:dds8n15, 3' e...  1191   0.0    1
(BJ346362) Dictyostelium discoideum cDNA clone:dda30m18, 3' ...  1158   0.0    1
(BJ376632) Dictyostelium discoideum cDNA clone:ddc29g08, 3' ...  1146   0.0    1
dna update 2009. 2.23
Homology vs Protein -
protein update 2009. 6. 1
PSORT 

 psg: 0.77  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLC195 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC195Z
3' end seq. 
>SLC195Z.Seq
----------GGTGTGTTGATGTATGGTCCACCAGGTACTGGTAAGACATTGTGTGCTCG
TGCCGTTGCAAATCGTACTGATGCCGCTTTTGTTCGTGTTATTGGTTCAGAGTTGGTGCA
AAAGTATGTTGGTGAGGGTGCACGTATGGTACGTGATCTCTTTCAAATGGCACGTTCAAA
GAAGGCATGTATTATCTTTTTCGATGAAGTTGATGCAATTGGTGGTGCTCGTTTCGATGA
TGGTGCAGGCGGTGACAATGAGGTTCAACGTACTATGTTAGAGTTGATCAATCAATTGGA
TGGTTTCGATCCACGTGGTAACATTAAAGTATTGATGGCAACCAATCGTCCAGATACTTT
GGATCCAGCTCTTCTTCGTCCAGGTCGTCTCGATCGTAAGGTTGAATTTGGTTTACCAGA
CTTGGAGGGTCGTGCTCACATCTTTACCATTCATGCCAAAACTATGAGCTGTGCTCGTGA
TATTCGTTTCGAATTATTGGCTCGTCTTTGTCCAAACTCAACTGGTGCCGATATTAGATC
CGTTTGTACCGAAGCTGGTATGTTTGCAATTCGTGCTCGTAGAAAGGTTGTAAGTGAAAA
AGACTTTTTAGAAGCTATTGATAAAGTTATTAAATCTTATGCTAAATTTAGTGCAACTTC
AAGATATATGCATTATAATTAAATTTTTTTAAAAAAAAAAAAAAAAATTTTATATATATT
TCAT
Length of 3' end seq. 714
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -