SLC194
Library SL
(Link to library)
Clone ID SLC194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLC194Z
(Link to Original site)
Representative DNA sequence
>SLC194 (SLC194Q) /CSM/SL/SLC1-D/SLC194Q.Seq.d/
XXXXXXXXXXTTATGAAGGTGAACGTGCTATGACCAAGATAATAATTTATTGGGTAAATT
TGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGA
TGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCATCTGGTAACAAACA
AAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGT
TGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAA
GAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGC
AGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAA
ATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTT
AGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGG
TGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGA
CGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAA
AATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATT
sequence update 1998. 4.23
Translated Amino Acid sequence
---*r*TCYDQDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKSSGNKQK
ITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAA
KISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGG
GMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhi


Translated Amino Acid sequence (All Frames)
Frame A:
---yegeramtkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myqlkinhlvtnk
rlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklq
pkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkv
vvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkashi*yt


Frame B:
---mkvnvl*pr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r*iiw*qtk
dynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn*r*kscs
qnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrw
wyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklliysth


Frame C:
---*r*TCYDQDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKSSGNKQK
ITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAA
KISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGG
GMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyivhi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC194 (SLC194Q) /CSM/SL/SLC1-D/SLC194Q.Seq.d/ 1386 0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/ 1364 0.0
VFL101 (VFL101Q) /CSM/VF/VFL1-A/VFL101Q.Seq.d/ 1364 0.0
CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/ 1364 0.0
CHS205 (CHS205Q) /CSM/CH/CHS2-A/CHS205Q.Seq.d/ 1364 0.0
CHQ771 (CHQ771Q) /CSM/CH/CHQ7-C/CHQ771Q.Seq.d/ 1364 0.0
AHC324 (AHC324Q) /CSM/AH/AHC3-A/AHC324Q.Seq.d/ 1364 0.0
CHQ617 (CHQ617Q) /CSM/CH/CHQ6-A/CHQ617Q.Seq.d/ 1362 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 1360 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1360 0.0

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034476) Dictyostelium discoideum slug cDNA, clone SLC194. 1386 0.0 1
(X75263) D.discoideum (AX3) mRNA for heat shock cognate prot... 1328 0.0 2
(BJ446063) Dictyostelium discoideum cDNA clone:ddv61c18, 3' ... 1328 0.0 2
(BJ433801) Dictyostelium discoideum cDNA clone:ddv23a01, 3' ... 1328 0.0 2
(BJ386592) Dictyostelium discoideum cDNA clone:ddc58b22, 3' ... 1328 0.0 2
(BJ386397) Dictyostelium discoideum cDNA clone:ddc58i02, 3' ... 1328 0.0 2
(BJ385656) Dictyostelium discoideum cDNA clone:ddc55n17, 3' ... 1328 0.0 2
(BJ349049) Dictyostelium discoideum cDNA clone:dda35p05, 3' ... 1328 0.0 2
(BJ409564) Dictyostelium discoideum cDNA clone:dds42d17, 3' ... 1326 0.0 2
(BJ385447) Dictyostelium discoideum cDNA clone:ddc55a06, 3' ... 1326 0.0 2
dna update 2009. 2.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 313 2e-84
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 313 2e-84
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s... 223 3e-57
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803... 221 1e-56
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 219 5e-56
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803... 219 6e-56
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 219 8e-56
AC147536_23(AC147536|pid:none) Medicago truncatula clone mth2-9l... 219 8e-56
AY830127_1(AY830127|pid:none) Medicago sativa heat shock protein... 219 8e-56
AC146757_29(AC146757|pid:none) Medicago truncatula clone mth2-16... 219 8e-56
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SLC194 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC194Z
3' end seq.
>SLC194Z.Seq
----------TTATGAAGGTGAACGTGCTATGACCAAGATAATAATTTATTGGGTAAATT
TGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGA
TGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCATCTGGTAACAAACA
AAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGT
TGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAA
GAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGC
AGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAA
ATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTT
AGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGG
TGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGA
CGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAA
AATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATT
Length of 3' end seq. 699
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -