SLC188
Library SL
(Link to library)
Clone ID SLC188
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03903-1
Original site URL
Representative seq. ID SLC188E
(Link to Original site)
Representative DNA sequence
>SLC188 (SLC188Q) /CSM/SL/SLC1-D/SLC188Q.Seq.d/
AGAAAGAGTATTTTTAATAATGGTTACCTCGATCAATATGGTGAATCCGATCCAACTTTG
GATCGTGGTAAACCATTATTAAGAAATGATAATAACTTTCAAGATCTTTGGAATTGTTGG
ATTACTCATTCAATTGAGGATCGTTTCCTTTCAAACTCAACACTTTCTTCTAGAACTTTT
TAAATATATAAATATATAAAAAAAAAATAAAAATAAAAAATAAAAAAAAAATAAAAAAAA
AAATTAGATTTTTTTTTTTGGAAGTGTTTATTAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence
RKSIFNNGYLDQYGESDPTLDRGKPLLRNDNNFQDLWNCWITHSIEDRFLSNSTLSSRTF
*iykyikkk*k*kikkk*kkkldfffwkcllk


Translated Amino Acid sequence (All Frames)
Frame A:
RKSIFNNGYLDQYGESDPTLDRGKPLLRNDNNFQDLWNCWITHSIEDRFLSNSTLSSRTF
*iykyikkk*k*kikkk*kkkldfffwkcllk


Frame B:
ervflimvtsinmvnpiqlwivvnhy*emiitfkifgivglliqlrivsfqtqhfllelf
kyini*kknknkk*kknkkkn*ifffgsvy*k


Frame C:
keyf**wlprsiw*irsnfgsw*tiikk***lsrslelldysfn*gsfpfklntff*nfl
ni*iykkkikiknkkkikkkirffflevfik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC188 (SLC188Q) /CSM/SL/SLC1-D/SLC188Q.Seq.d/ 391 e-108
VSC463 (VSC463Q) /CSM/VS/VSC4-C/VSC463Q.Seq.d/ 383 e-105
SLJ509 (SLJ509Q) /CSM/SL/SLJ5-A/SLJ509Q.Seq.d/ 42 0.004
SLH579 (SLH579Q) /CSM/SL/SLH5-D/SLH579Q.Seq.d/ 42 0.004
SLH356 (SLH356Q) /CSM/SL/SLH3-C/SLH356Q.Seq.d/ 42 0.004
SLG317 (SLG317Q) /CSM/SL/SLG3-A/SLG317Q.Seq.d/ 42 0.004
SLF535 (SLF535Q) /CSM/SL/SLF5-B/SLF535Q.Seq.d/ 42 0.004
SLB843 (SLB843Q) /CSM/SL/SLB8-B/SLB843Q.Seq.d/ 42 0.004
CFK149 (CFK149Q) /CSM/CF/CFK1-C/CFK149Q.Seq.d/ 42 0.004
SSJ737 (SSJ737Q) /CSM/SS/SSJ7-B/SSJ737Q.Seq.d/ 38 0.067

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034472) Dictyostelium discoideum slug cDNA, clone SLC188. 391 e-108 2
(AU262582) Dictyostelium discoideum vegetative cDNA clone:VS... 383 e-105 2
(BX322647) Zebrafish DNA sequence from clone DKEYP-86F8 in l... 52 0.011 1
(CU570798) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.14 2
(AC184184) Strongylocentrotus purpuratus clone R3-3021D6, WO... 40 0.44 2
(CU929659) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.54 4
(AX344565) Sequence 16 from Patent WO0200932. 36 0.58 4
(EA698714) Sequence 77593 from patent US 7365185. 34 0.62 3
(ET100352) QM0AAB16CG08FM1 CCER1 Citrus clementina genomic c... 46 0.66 1
(ET097143) QM0AAB10CG08FM1 CCER1 Citrus clementina genomic c... 46 0.66 1
dna update 2009. 2.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001576_520(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 39 0.044
(O70481) RecName: Full=E3 ubiquitin-protein ligase UBR1; ... 39 0.075
(Q8IWV7) RecName: Full=E3 ubiquitin-protein ligase UBR1; ... 39 0.075
AL844548_1(AL844548|pid:none) Mouse DNA sequence from clone RP23... 39 0.075
FN357904_3(FN357904|pid:none) Schistosoma mansoni genome sequenc... 37 0.17
BC107934_1(BC107934|pid:none) Rattus norvegicus similar to ubiqu... 37 0.22
BC026391_1(BC026391|pid:none) Mus musculus ubiquitin protein lig... 37 0.22
BC025617_1(BC025617|pid:none) Mus musculus ubiquitin protein lig... 37 0.22
BC031403_1(BC031403|pid:none) Mus musculus ubiquitin protein lig... 37 0.22
AK147445_1(AK147445|pid:none) Mus musculus cDNA, RIKEN full-leng... 37 0.22
protein update 2009. 7. 4
PSORT

psg: 0.55 gvh: 0.35 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
28.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLC188 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC188E
Full length Seq.
>SLC188E.Seq
AGAAAGAGTATTTTTAATAATGGTTACCTCGATCAATATGGTGAATCCGATCCAACTTTG
GATCGTGGTAAACCATTATTAAGAAATGATAATAACTTTCAAGATCTTTGGAATTGTTGG
ATTACTCATTCAATTGAGGATCGTTTCCTTTCAAACTCAACACTTTCTTCTAGAACTTTT
TAAATATATAAATATATAAAAAAAAAATAAAAATAAAAAATAAAAAAAAAATAAAAAAAA
AAATTAGATTTTTTTTTTTGGAAGTGTTTATTAAAAA
Length of full length seq. 277