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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC181
Library SL
(Link to library)
Clone ID SLC181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15420-1
Original site URL
Representative seq. ID SLC181Z
(Link to Original site)
Representative DNA sequence 
>SLC181 (SLC181Q) /CSM/SL/SLC1-D/SLC181Q.Seq.d/
XXXXXXXXXXTTTATATTAAATATATATATATATATTAGTCCCATCCCACCCGCCCTTAG
TCGGAATTCCATAAATCAAATTGTTTTAGTTTTTAGTGCCACTATTTATACGTTTTTATT
TTCTTAAAAATTTAGCAAAACTCAAAAAAATAAGAGTTTTCGACCCTTCACAACTTTGTG
CATAGTGTCGGTTCGGAATTTTTCAGTTTTTCGACCTTGCGCAATTATCGCGTCATTGTG
CCGGTTCGAAATTTTTACTTTTCTTTCGAAAATTTTTTATTCTTCGAATGTTCTAGAACA
TTCTAAAAAATTATCTTAAATATTTGGGAAATTCAAATAAATAAATTTTATTTATAATAT
ATATATATATATTTAATATAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---ilniyiyispippalsrnsinqivlvfsatiytflfs*KFSKTQKNKSFRPFTTLCI
VSVRNFSVFRPCAIIASLCRFEIFTFLSKIFYSSNVLEHSKKLS*ifgkfk*infiyniy
iyi*ykk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ly*iyiyilvpshpplvgip*iklf*flvplfirfyflknlaklkkirvfdpsqlca
*crfgifqffdlaqlsrhcagskfllffrkffilrmf*nilknylkylgnsnk*ilfiiy
iyifnikk


Frame B:
---yikyiyiy*shptrp*sefhksncfsf*chylyvfiflki*qnskk*efstlhnfvh
svgseffsfstlrnyrvivpvrnfyfsfenflffecsrtf*kiilniweiqinkfyl*yi
yiyli*kk


Frame C:
---ilniyiyispippalsrnsinqivlvfsatiytflfs*KFSKTQKNKSFRPFTTLCI
VSVRNFSVFRPCAIIASLCRFEIFTFLSKIFYSSNVLEHSKKLS*ifgkfk*infiyniy
iyi*ykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC181 (SLC181Q) /CSM/SL/SLC1-D/SLC181Q.Seq.d/                        585   e-166
SLI627 (SLI627Q) /CSM/SL/SLI6-B/SLI627Q.Seq.d/                        569   e-161
SLE632 (SLE632Q) /CSM/SL/SLE6-B/SLE632Q.Seq.d/                        545   e-154
SLF219 (SLF219Q) /CSM/SL/SLF2-A/SLF219Q.Seq.d/                        537   e-152
FC-AE03 (FC-AE03Q) /CSM/FC/FC-AE/FC-AE03Q.Seq.d/                      256   2e-67
VSE755 (VSE755Q) /CSM/VS/VSE7-C/VSE755Q.Seq.d/                         36   0.37
VSC259 (VSC259Q) /CSM/VS/VSC2-C/VSC259Q.Seq.d/                         36   0.37
VHM457 (VHM457Q) /CSM/VH/VHM4-C/VHM457Q.Seq.d/                         36   0.37
VFK587 (VFK587Q) /CSM/VF/VFK5-D/VFK587Q.Seq.d/                         36   0.37
SSM168 (SSM168Q) /CSM/SS/SSM1-C/SSM168Q.Seq.d/                         36   0.37
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034468) Dictyostelium discoideum slug cDNA, clone SLC181.      303   e-136  2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...   295   e-133  2
(AU053426) Dictyostelium discoideum slug cDNA, clone SLI627.      295   e-133  2
(AF298624) Dictyostelium discoideum chromosome 2 repeat region.   280   e-126  2
(AU052858) Dictyostelium discoideum slug cDNA, clone SLF219.      287   e-126  2
(AU034879) Dictyostelium discoideum slug cDNA, clone SLE632.      272   e-126  2
(K01222) Slime mold (D.discoideum) transposable element Tdd-...   295   e-123  3
(M11339) Slime mold (D.discoideum) transposon DIRS-1, comple...   184   e-116  5
(M11340) Slime mold (D.discoideum) transposon DIRS-1, clone ...   141   e-111  4
(K01221) Slime mold (D.discoideum) transposable element Tdd-...   186   e-102  3
dna update 2009. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ498995_1(FJ498995|pid:none) Pardalotus sp. CCJ-2008 cytochrome...    32   5.1
AF197847_1(AF197847|pid:none) Pardalotus striatus cytochrome b g...    32   5.1
AM910995_420(AM910995|pid:none) Plasmodium knowlesi strain H chr...    32   8.7
DQ158856_83(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    32   8.7
DQ923614_1(DQ923614|pid:none) Drosophila melanogaster DUNC79 mRN...    32   8.7
protein update 2009. 6. 1
PSORT 

 psg: 0.76  gvh: 0.46  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.52  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: nuclear

>> prediction for SLC181 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC181Z
3' end seq. 
>SLC181Z.Seq
----------TTTATATTAAATATATATATATATATTAGTCCCATCCCACCCGCCCTTAG
TCGGAATTCCATAAATCAAATTGTTTTAGTTTTTAGTGCCACTATTTATACGTTTTTATT
TTCTTAAAAATTTAGCAAAACTCAAAAAAATAAGAGTTTTCGACCCTTCACAACTTTGTG
CATAGTGTCGGTTCGGAATTTTTCAGTTTTTCGACCTTGCGCAATTATCGCGTCATTGTG
CCGGTTCGAAATTTTTACTTTTCTTTCGAAAATTTTTTATTCTTCGAATGTTCTAGAACA
TTCTAAAAAATTATCTTAAATATTTGGGAAATTCAAATAAATAAATTTTATTTATAATAT
ATATATATATATTTAATATAAAAAAAA
Length of 3' end seq. 377
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -