SLC167
Library SL
(Link to library)
Clone ID SLC167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC167Z
(Link to Original site)
Representative DNA sequence
>SLC167 (SLC167Q) /CSM/SL/SLC1-C/SLC167Q.Seq.d/
XXXXXXXXXXCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCG
TCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAA
CTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCA
CCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTA
TGGAATCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATA
TCCGTAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTA
TTGCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAA
TCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCAC
TCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAA
TTGTCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACAA
ACAAATATATTTAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATC
TTTATCCGACTATCAAAA
sequence update 1998. 4.22
Translated Amino Acid sequence
---LTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVIT
IGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGI
ADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSI
VHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik


Translated Amino Acid sequence (All Frames)
Frame A:
---LTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVIT
IGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGI
ADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSI
VHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik


Frame B:
---*lnvvthsppllkeksseiskkn*ptspstlklkckllphhqpsknhtnyqtvkssp
svmnvsvaqkpssnhhs*vwnqlvstkppitps*nvmlisvkiytvmssylvvqlcsqvl
liv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhql
stenvskqlklvmkvlltqtnifkciiiikynyf*wllifirlsk


Frame C:
---n*twllihhhc*krnrqryqrkislrrprl*s*nanccliisprkiiritrrsshhh
r**tfplprsplptiilrygiswyprnhl*lhhem*c*yp*rfir*crliwwynyvpryc
*syeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptnvdlqrri*rirsinc
pqkmflnn*n***kcfshkqiylnv****niiifngc*slsdyq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/ 1174 0.0
VFM863 (VFM863Q) /CSM/VF/VFM8-C/VFM863Q.Seq.d/ 1174 0.0
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/ 1174 0.0
VFL589 (VFL589Q) /CSM/VF/VFL5-D/VFL589Q.Seq.d/ 1174 0.0
VFK573 (VFK573Q) /CSM/VF/VFK5-D/VFK573Q.Seq.d/ 1174 0.0
VFJ832 (VFJ832Q) /CSM/VF/VFJ8-B/VFJ832Q.Seq.d/ 1174 0.0
VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/ 1174 0.0
VFI621 (VFI621Q) /CSM/VF/VFI6-A/VFI621Q.Seq.d/ 1174 0.0
VFI569 (VFI569Q) /CSM/VF/VFI5-C/VFI569Q.Seq.d/ 1174 0.0
VFI269 (VFI269Q) /CSM/VF/VFI2-C/VFI269Q.Seq.d/ 1174 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1174 0.0 1
(AU040008) Dictyostelium discoideum slug cDNA, clone SLH431. 1174 0.0 1
(AU040003) Dictyostelium discoideum slug cDNA, clone SLH418. 1174 0.0 1
(AU034474) Dictyostelium discoideum slug cDNA, clone SLC191. 1174 0.0 1
(AU034462) Dictyostelium discoideum slug cDNA, clone SLC167. 1174 0.0 1
(AU034424) Dictyostelium discoideum slug cDNA, clone SLC856. 1174 0.0 1
(AU033559) Dictyostelium discoideum slug cDNA, clone SLB167. 1174 0.0 1
(AU033550) Dictyostelium discoideum slug cDNA, clone SLB157. 1174 0.0 1
(BJ436244) Dictyostelium discoideum cDNA clone:ddv30d16, 3' ... 1174 0.0 1
(BJ435292) Dictyostelium discoideum cDNA clone:ddv26n16, 3' ... 1174 0.0 1
dna update 2009. 2.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 366 e-100
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 366 e-100
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 366 e-100
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 362 5e-99
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 362 5e-99
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 362 5e-99
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 359 4e-98
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 359 5e-98
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p... 358 8e-98
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 357 2e-97
protein update 2009. 6. 1
PSORT

psg: 0.86 gvh: 0.38 alm: 0.46 top: 0.47 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SLC167 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC167Z
3' end seq.
>SLC167Z.Seq
----------CTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCG
TCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAA
CTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCA
CCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTA
TGGAATCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATA
TCCGTAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTA
TTGCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAA
TCATTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCAC
TCTCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAA
TTGTCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACAA
ACAAATATATTTAAATGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATC
TTTATCCGACTATCAAAA
Length of 3' end seq. 668
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -