SLC166
Library SL
(Link to library)
Clone ID SLC166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLC166Z
(Link to Original site)
Representative DNA sequence
>SLC166 (SLC166Q) /CSM/SL/SLC1-C/SLC166Q.Seq.d/
XXXXXXXXXXAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTC
AAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGT
TTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCC
AAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCAT
CCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCC
TGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAA
GAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCA
TCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTC
AGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCA
GGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAAT
ATTTCTTAATAAATAGCATTTTATAATAATTTTAA
sequence update 1998. 4.22
Translated Amino Acid sequence
---PGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSK
NDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKE
GTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPG
KAGDKKGAAAPSKKK*innis**iafynnf


Translated Amino Acid sequence (All Frames)
Frame A:
---trygrhlcpswsln*sqisrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lq
krsttrn*kircssyrpqpsrsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqr
rycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqryetnrrrrchqinrqespr
*sr**ercccpikkeink*yflinsil**f*


Frame B:
---PGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSK
NDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKE
GTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPG
KAGDKKGAAAPSKKK*innis**iafynnf


Frame C:
---qvwssplpqlvsqlksnqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpk
tihhkklknsllklssstiqvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkk
vlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqv
kpvirkvllphqkrnk*iiflnk*hfiiil


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 1122 0.0
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 1122 0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 1122 0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 1122 0.0
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 1122 0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 1122 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 1122 0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/ 1122 0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/ 1122 0.0
VFN415 (VFN415Q) /CSM/VF/VFN4-A/VFN415Q.Seq.d/ 1122 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 1126 0.0 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 1126 0.0 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 1126 0.0 1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS... 1126 0.0 1
(AU263935) Dictyostelium discoideum vegetative cDNA clone:VS... 1126 0.0 1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS... 1126 0.0 1
(AU263066) Dictyostelium discoideum vegetative cDNA clone:VS... 1126 0.0 1
(AU060206) Dictyostelium discoideum slug cDNA, clone SLA573. 1126 0.0 1
(AU052275) Dictyostelium discoideum slug cDNA, clone SLA488. 1126 0.0 1
(AU052273) Dictyostelium discoideum slug cDNA, clone SLA482. 1126 0.0 1
dna update 2009. 2.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 346 3e-94
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 346 3e-94
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 346 3e-94
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 268 7e-71
(P41745) RecName: Full=Elongation factor 1-alpha; Short... 267 2e-70
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 267 2e-70
AJ549292_1(AJ549292|pid:none) Podocoryne carnea mRNA for elongat... 266 4e-70
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac... 266 5e-70
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 266 5e-70
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene... 265 6e-70
protein update 2009. 6. 1
PSORT

psg: 0.93 gvh: 0.50 alm: 0.45 top: 0.33 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: vacuolar
8.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal

>> prediction for SLC166 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC166Z
3' end seq.
>SLC166Z.Seq
----------AACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTC
AAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGT
TTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCC
AAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCAT
CCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCC
TGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAA
GAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCA
TCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTC
AGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCA
GGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAAT
ATTTCTTAATAAATAGCATTTTATAATAATTTTAA
Length of 3' end seq. 625
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -