SLC152
Library SL
(Link to library)
Clone ID SLC152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15674-1
Original site URL
Representative seq. ID SLC152Z
(Link to Original site)
Representative DNA sequence
>SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/
XXXXXXXXXXTTTCTCTTTACCAATCAAGGAGTACCAAATCATTGATAAATTCCTTAACC
TCAAGGATGAAGTTATGAAGATTGTTCCAGTTCAAAAGCAAACTCGTGCTGGTCAACGTA
CCCGTTTCAAGGCTTTCGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTA
AATGCGCTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAG
TCATCCCAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAA
CCAAAGTCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTA
CTGGTATCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATG
TTTACACATCTTCACGTGGTAAGACCAGAACCATGGGTAACTTTGTCATGGCCACTTTCT
TCGCCATCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAA
TCAAGACTCCATACCAAGAACACTCTGCCAAATTATCCGAAAAACAACAATAAATCAATT
TTAATTAATTTTTTACTGTTTTAA
sequence update 1998. 4.22
Translated Amino Acid sequence
---FSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVK
CAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGT
GIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLI
KTPYQEHSAKLSEKQQ*infn*fftvl


Translated Amino Acid sequence (All Frames)
Frame A:
---FSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVK
CAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGT
GIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLI
KTPYQEHSAKLSEKQQ*infn*fftvl


Frame B:
---slyqsrstkslinsltsrmkl*rlfqfksklvlvnvpvsrlssllvittvm*vsvln
alrklpppflvlsllpnyqssqfvvvigvtnsvlhtlsqpkslvnavpslyvsfqpqevl
vslllvfqrnysnmlvlmmfthlhvvrpepwvtlswplsspsprpllt*pqifgeksn*s
rlhtkntlpnypknnnksilinfllf*


Frame C:
---lftnqgvpnh**ip*pqg*syedcssskanscwstypfqgfrrcw*sqrscrsrc*m
r*gschrhfwcyrccqiishpssswllg*qtrcsthcpnqshw*mrfrrctsrsspkryw
yrccscskeitpicwc**clhiftw*dqnhg*lchghflrhhqdlcllnprslersqinq
dsiprtlcqiirkttinqf*lifycf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/ 1217 0.0
SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/ 1215 0.0
FC-AC19 (FC-AC19Q) /CSM/FC/FC-AC/FC-AC19Q.Seq.d/ 1205 0.0
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/ 1201 0.0
FC-BA12 (FC-BA12Q) /CSM/FC/FC-BA/FC-BA12Q.Seq.d/ 1187 0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/ 1181 0.0
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/ 1174 0.0
VHN687 (VHN687Q) /CSM/VH/VHN6-D/VHN687Q.Seq.d/ 1172 0.0
AFO729 (AFO729Q) /CSM/AF/AFO7-B/AFO729Q.Seq.d/ 1164 0.0
FC-BD02 (FC-BD02Q) /CSM/FC/FC-BD/FC-BD02Q.Seq.d/ 1152 0.0

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034454) Dictyostelium discoideum slug cDNA, clone SLC152. 1217 0.0 1
(AU035013) Dictyostelium discoideum slug cDNA, clone SLE490. 1215 0.0 1
(AU284245) Dictyostelium discoideum gamete cDNA clone:FC-AC1... 1205 0.0 1
(BJ437816) Dictyostelium discoideum cDNA clone:ddv35p10, 3' ... 1201 0.0 1
(AU284508) Dictyostelium discoideum gamete cDNA clone:FC-BA1... 1187 0.0 1
(BJ431130) Dictyostelium discoideum cDNA clone:ddv9p21, 3' e... 1179 0.0 1
(BJ445252) Dictyostelium discoideum cDNA clone:ddv58m22, 3' ... 1172 0.0 1
(BJ438188) Dictyostelium discoideum cDNA clone:ddv36k17, 3' ... 1172 0.0 1
(BJ346254) Dictyostelium discoideum cDNA clone:dda30j07, 3' ... 1164 0.0 1
(X56297) D.discoideum LLRep3 mRNA. 1156 0.0 1
dna update 2009. 2.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=R... 386 e-106
AY961548_1(AY961548|pid:none) Lysiphlebus testaceipes ribosomal ... 301 1e-80
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m... 301 1e-80
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa... 301 1e-80
(Q93VB8) RecName: Full=40S ribosomal protein S2-2; &AB076984_1(... 301 1e-80
(Q8L8Y0) RecName: Full=40S ribosomal protein S2-1; &AB008016_1(... 301 1e-80
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m... 300 2e-80
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H... 300 3e-80
(Q9SCM3) RecName: Full=40S ribosomal protein S2-4; &AK228054_1(... 299 5e-80
AY120723_1(AY120723|pid:none) Arabidopsis thaliana ribosomal pro... 298 6e-80
protein update 2009. 6. 1
PSORT

psg: 0.65 gvh: 0.33 alm: 0.31 top: 0.73 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SLC152 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC152Z
3' end seq.
>SLC152Z.Seq
----------TTTCTCTTTACCAATCAAGGAGTACCAAATCATTGATAAATTCCTTAACC
TCAAGGATGAAGTTATGAAGATTGTTCCAGTTCAAAAGCAAACTCGTGCTGGTCAACGTA
CCCGTTTCAAGGCTTTCGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTA
AATGCGCTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAG
TCATCCCAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAA
CCAAAGTCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTA
CTGGTATCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATG
TTTACACATCTTCACGTGGTAAGACCAGAACCATGGGTAACTTTGTCATGGCCACTTTCT
TCGCCATCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAA
TCAAGACTCCATACCAAGAACACTCTGCCAAATTATCCGAAAAACAACAATAAATCAATT
TTAATTAATTTTTTACTGTTTTAA
Length of 3' end seq. 614
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -