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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC139
Library SL
(Link to library)
Clone ID SLC139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15518-1
Original site URL
Representative seq. ID SLC139P
(Link to Original site)
Representative DNA sequence 
>SLC139 (SLC139Q) /CSM/SL/SLC1-B/SLC139Q.Seq.d/
CATAAATATAATAAACATAAAAAATGAGTAAAATCATTCACAATTTACAAAACATAGAGT
TAGACTCATTAAAAAAACTTGGAGAAGTTACCAAATATTTAAATGAACATCCAATGCTTA
GATCATTTTTAATTTCCACTGGTCTCATTGTAACCTCAAAATTAATTAAATTAATCAAAA
ATAGAATTAGAAATAATACAATTTTAGAAATTGATTTTACAAATACAATTGATACATCTG
ATGTTGATATTAGTCCAATTGAAAAATTACTTGATCCAAATATTATTTCATTTAGATCAC
TTTTAGATGCAATTGAAAAAGCAGCAAATGATAAGAGGGTGATTGGTTTAATTGTTAGAT
TAAGTGGTGAAAATCAATTTTCATTAGCAAATATTCAAGAATTTAGAAATGCAATTTCAT
TCTTTAAGAGTAAAGGTAAGAGAACCGTTGCTTTCACTGATTCATTCTGTGAGGCTGGTA
GTGGTATTGGTAGATACTATATGGCTTCAATTTTCCATGATGTCTATATGGCACCATCAG
GTACTTTAAATTTAATTAATACTCAATATGATTTCGCTTTCATTAAGAAAACTCTTGAAA
AATTAAATATTGTACCXXXXXXXXXXCCTCCATTTGAATCCAGATGGTGCCACTGACAAT
TCAACTTACTTCTCCTCATTACACAATTACACAGAAAAGCAATTGGCCGAGGTCAATAGT
TATATGGATTTCATTTATGAAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGATTAACT
CGTGATCAAGTTGAAGAGATTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCATTAAAA
CTCTCACTCGTTGATAAATTGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAGAATTG
GTTGGTATCGCATCAAATGTTCAACCACATGTTGTCACCTATCCAAAGGAAACAGTTTTA
TCACAATTGGTTGCCTCTAGTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCACTCCA
GCTCAAGCTTCAATCACTCATTCTGTTGGTGTTTCAACATCAATCTTTACCAAATTTTCA
ACACTTACAAAATTAATTCTTTTACCAAATAATTCAATCTCTTCAATTGCAAATACTTTA
ATTAATAATCAAAAAAATAGTAATATCTTATCAATGAATCAATCTTCATTAATTTCTTCA
TCTTTTTAAAATTTTTTTAAAATAAAAATTTAAATAAAATTTAA
sequence update 1999. 1.11
Translated Amino Acid sequence 
*i**t*KMSKIIHNLQNIELDSLKKLGEVTKYLNEHPMLRSFLISTGLIVTSKLIKLIKN
RIRNNTILEIDFTNTIDTSDVDISPIEKLLDPNIISFRSLLDAIEKAANDKRVIGLIVRL
SGENQFSLANIQEFRNAISFFKSKGKRTVAFTDSFCEAGSGIGRYYMASIFHDVYMAPSG
TLNLINTQYDFAFIKKTLEKLNIV---

---LHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYEDFTSKVSKGRRLTRDQVEE
IARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNVQPHVVTYPKETVLSQLVAS
SANNSQDLERRGTPAQASITHSVGVSTSIFTKFSTLTKLILLPNNSISSIANTLINNQKN
SNILSMNQSSLISSSF*nffkiki*ikf
Translated Amino Acid sequence (All Frames) 
Frame A:
hkynkhkk*vksftiykt*s*th*knleklpni*mniqcldhf*fplvsl*pqn*ln*sk
ieleiiqf*klilqiqlihlmlilvqlknyliqilfhldhf*mqlkkqqmirg*lv*lld
*vvkinfh*qifknlemqfhslrvkvrepllslihsvrlvvvlvdtiwlqfsmmsiwhhq
vl*i*lilnmislslrkllkn*ily---

---ppfesrwch*qfnllllitqlhrkaigrgq*lygfhl*rfh**s**rs*ins*ss*r
dcswscldwcssiktltr**igwlergn*scqrigwyrikcsttcchlskgnsfitigcl
*ckqfsrp*ktwhssssfnhsfcwcfninlyqifntykinsftk*fnlfnckyfn**skk
**ylinesifinffiflkff*nknlnki*

Frame B:
iniinikne*nhsqftkhrvrlikktwrsyqifk*tsna*iifnfhwshcnlkin*inqk
*n*k*ynfrn*fykyn*yi*c*y*sn*kit*skyyfi*itfrcn*kssk**egdwfnc*i
kw*ksifiskysri*kcnfil*e*r*enrcfh*fil*gw*wyw*ilygfnfp*clygtir
yfkfn*ysi*frfh*ens*kikyct---

---LHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYEDFTSKVSKGRRLTRDQVEE
IARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNVQPHVVTYPKETVLSQLVAS
SANNSQDLERRGTPAQASITHSVGVSTSIFTKFSTLTKLILLPNNSISSIANTLINNQKN
SNILSMNQSSLISSSF*nffkiki*ikf

Frame C:
*i**t*KMSKIIHNLQNIELDSLKKLGEVTKYLNEHPMLRSFLISTGLIVTSKLIKLIKN
RIRNNTILEIDFTNTIDTSDVDISPIEKLLDPNIISFRSLLDAIEKAANDKRVIGLIVRL
SGENQFSLANIQEFRNAISFFKSKGKRTVAFTDSFCEAGSGIGRYYMASIFHDVYMAPSG
TLNLINTQYDFAFIKKTLEKLNIV---

---si*iqmvpltiqltsphytitqksnwprsiviwisfmkislvklvkvvd*lviklkr
llvvvfglvlkh*nshslinwva*krqlklpknwlvshqmfnhmlspiqrkqfyhnwlpl
vqtilktlkdvalqlklqslillvfqhqslpnfqhlqn*ffyqiiqslqlqil*liikki
visyq*inlh*flhlfkiflk*kfk*nl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC139 (SLC139Q) /CSM/SL/SLC1-B/SLC139Q.Seq.d/                       2240   0.0
CHO817 (CHO817Q) /CSM/CH/CHO8-A/CHO817Q.Seq.d/                       1179   0.0
AFA441 (AFA441Q) /CSM/AF/AFA4-B/AFA441Q.Seq.d/                       1179   0.0
AHJ464 (AHJ464Q) /CSM/AH/AHJ4-C/AHJ464Q.Seq.d/                       1166   0.0
VHE436 (VHE436Q) /CSM/VH/VHE4-B/VHE436Q.Seq.d/                       1118   0.0
VHJ536 (VHJ536Q) /CSM/VH/VHJ5-B/VHJ536Q.Seq.d/                       1114   0.0
VHO671 (VHO671Q) /CSM/VH/VHO6-C/VHO671Q.Seq.d/                       1106   0.0
AFJ890 (AFJ890Q) /CSM/AF/AFJ8-D/AFJ890Q.Seq.d/                       1104   0.0
SSD325 (SSD325Q) /CSM/SS/SSD3-B/SSD325Q.Seq.d/                       1100   0.0
CHR842 (CHR842Q) /CSM/CH/CHR8-B/CHR842Q.Seq.d/                       1100   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034172) Dictyostelium discoideum slug cDNA, clone SLC139.     1039   0.0    2
(C92273) Dictyostelium discoideum slug cDNA, clone SSD325.       1039   0.0    2
(BJ445796) Dictyostelium discoideum cDNA clone:ddv60m18, 3' ...  1039   0.0    2
(BJ442580) Dictyostelium discoideum cDNA clone:ddv50g09, 3' ...  1039   0.0    2
(BJ439069) Dictyostelium discoideum cDNA clone:ddv39h10, 3' ...  1039   0.0    2
(BJ386142) Dictyostelium discoideum cDNA clone:ddc57d12, 3' ...  1039   0.0    2
(BJ384865) Dictyostelium discoideum cDNA clone:ddc51b06, 3' ...  1039   0.0    2
(BJ343283) Dictyostelium discoideum cDNA clone:dda22h15, 3' ...  1039   0.0    2
(BJ443025) Dictyostelium discoideum cDNA clone:ddv51m18, 3' ...  1031   0.0    2
(BJ353314) Dictyostelium discoideum cDNA clone:dda49p16, 3' ...  1031   0.0    2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000613_552(CP000613|pid:none) Rhodospirillum centenum SW, comp...    85   1e-17
CP000449_864(CP000449|pid:none) Maricaulis maris MCS10, complete...    93   2e-17
CP000580_1064(CP000580|pid:none) Mycobacterium sp. JLS, complete...    92   5e-17
CP000384_1034(CP000384|pid:none) Mycobacterium sp. MCS, complete...    92   5e-17
CP000113_7315(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    90   1e-16
CT573213_6085(CT573213|pid:none) Frankia alni str. ACN14A chromo...    86   2e-16
AE016958_4188(AE016958|pid:none) Mycobacterium avium subsp. para...    89   3e-16
CP000088_577(CP000088|pid:none) Thermobifida fusca YX, complete ...    87   2e-15
CP000820_795(CP000820|pid:none) Frankia sp. EAN1pec, complete ge...    84   3e-15
AL583923_183(AL583923|pid:none) Mycobacterium leprae strain TN c...    85   6e-15
protein update 2009. 6. 1
PSORT 

 psg: 0.71  gvh: 0.49  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SLC139 is cyt
5' end seq. ID SLC139F
5' end seq. 
>SLC139F.Seq
CATAAATATAATAAACATAAAAAATGAGTAAAATCATTCACAATTTACAAAACATAGAGT
TAGACTCATTAAAAAAACTTGGAGAAGTTACCAAATATTTAAATGAACATCCAATGCTTA
GATCATTTTTAATTTCCACTGGTCTCATTGTAACCTCAAAATTAATTAAATTAATCAAAA
ATAGAATTAGAAATAATACAATTTTAGAAATTGATTTTACAAATACAATTGATACATCTG
ATGTTGATATTAGTCCAATTGAAAAATTACTTGATCCAAATATTATTTCATTTAGATCAC
TTTTAGATGCAATTGAAAAAGCAGCAAATGATAAGAGGGTGATTGGTTTAATTGTTAGAT
TAAGTGGTGAAAATCAATTTTCATTAGCAAATATTCAAGAATTTAGAAATGCAATTTCAT
TCTTTAAGAGTAAAGGTAAGAGAACCGTTGCTTTCACTGATTCATTCTGTGAGGCTGGTA
GTGGTATTGGTAGATACTATATGGCTTCAATTTTCCATGATGTCTATATGGCACCATCAG
GTACTTTAAATTTAATTAATACTCAATATGATTTCGCTTTCATTAAGAAAACTCTTGAAA
AATTAAATATTGTACC----------
Length of 5' end seq. 616
3' end seq. ID SLC139Z
3' end seq. 
>SLC139Z.Seq
----------CCTCCATTTGAATCCAGATGGTGCCACTGACAATTCAACTTACTTCTCCT
CATTACACAATTACACAGAAAAGCAATTGGCCGAGGTCAATAGTTATATGGATTTCATTT
ATGAAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGATTAACTCGTGATCAAGTTGAAG
AGATTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCATTAAAACTCTCACTCGTTGATA
AATTGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAGAATTGGTTGGTATCGCATCAA
ATGTTCAACCACATGTTGTCACCTATCCAAAGGAAACAGTTTTATCACAATTGGTTGCCT
CTAGTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCACTCCAGCTCAAGCTTCAATCA
CTCATTCTGTTGGTGTTTCAACATCAATCTTTACCAAATTTTCAACACTTACAAAATTAA
TTCTTTTACCAAATAATTCAATCTCTTCAATTGCAAATACTTTAATTAATAATCAAAAAA
ATAGTAATATCTTATCAATGAATCAATCTTCATTAATTTCTTCATCTTTTTAAAATTTTT
TTAAAATAAAAATTTAAATAAAATTTAA
Length of 3' end seq. 618
Connected seq. ID SLC139P
Connected seq. 
>SLC139P.Seq
CATAAATATAATAAACATAAAAAATGAGTAAAATCATTCACAATTTACAAAACATAGAGT
TAGACTCATTAAAAAAACTTGGAGAAGTTACCAAATATTTAAATGAACATCCAATGCTTA
GATCATTTTTAATTTCCACTGGTCTCATTGTAACCTCAAAATTAATTAAATTAATCAAAA
ATAGAATTAGAAATAATACAATTTTAGAAATTGATTTTACAAATACAATTGATACATCTG
ATGTTGATATTAGTCCAATTGAAAAATTACTTGATCCAAATATTATTTCATTTAGATCAC
TTTTAGATGCAATTGAAAAAGCAGCAAATGATAAGAGGGTGATTGGTTTAATTGTTAGAT
TAAGTGGTGAAAATCAATTTTCATTAGCAAATATTCAAGAATTTAGAAATGCAATTTCAT
TCTTTAAGAGTAAAGGTAAGAGAACCGTTGCTTTCACTGATTCATTCTGTGAGGCTGGTA
GTGGTATTGGTAGATACTATATGGCTTCAATTTTCCATGATGTCTATATGGCACCATCAG
GTACTTTAAATTTAATTAATACTCAATATGATTTCGCTTTCATTAAGAAAACTCTTGAAA
AATTAAATATTGTACC----------CCTCCATTTGAATCCAGATGGTGCCACTGACAAT
TCAACTTACTTCTCCTCATTACACAATTACACAGAAAAGCAATTGGCCGAGGTCAATAGT
TATATGGATTTCATTTATGAAGATTTCACTAGTAAAGTTAGTAAAGGTCGTAGATTAACT
CGTGATCAAGTTGAAGAGATTGCTCGTGGTCGTGTTTGGACTGGTGCTCAAGCATTAAAA
CTCTCACTCGTTGATAAATTGGGTGGCTTGAAAGAGGCAATTGAAGTTGCCAAAGAATTG
GTTGGTATCGCATCAAATGTTCAACCACATGTTGTCACCTATCCAAAGGAAACAGTTTTA
TCACAATTGGTTGCCTCTAGTGCAAACAATTCTCAAGACCTTGAAAGACGTGGCACTCCA
GCTCAAGCTTCAATCACTCATTCTGTTGGTGTTTCAACATCAATCTTTACCAAATTTTCA
ACACTTACAAAATTAATTCTTTTACCAAATAATTCAATCTCTTCAATTGCAAATACTTTA
ATTAATAATCAAAAAAATAGTAATATCTTATCAATGAATCAATCTTCATTAATTTCTTCA
TCTTTTTAAAATTTTTTTAAAATAAAAATTTAAATAAAATTTAA
Length of connected seq. 1234
Full length Seq ID -
Full length Seq. -
Length of full length seq. -