SLC128
Library SL
(Link to library)
Clone ID SLC128
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11682-1
Original site URL
Representative seq. ID SLC128Z
(Link to Original site)
Representative DNA sequence
>SLC128 (SLC128Q) /CSM/SL/SLC1-B/SLC128Q.Seq.d/
XXXXXXXXXXCTCCTTAAAGGATGGTTATGGTATCGCTGGTTGGGATGTTAAAAGTATTC
ATTCCTATCGTTATTTAAAAATCCTTCAAACTGGTCCAAATCAACGTGATGGTAATGAAC
TTTGTTTATGTTGTTTCGAAGTTTATGGTCGTTTAGTCTCTTTAGAAGATGATAATAACA
ATACAACATGTTCAAGTTTAACAGATGGTGAAAGTGATGATGATGAAATGAAAAATACAA
CTTCACATATTGACGATGATGATAGTGACAATGAAGATGTCAATGACAATAACAATGGCG
ATGATAGTGATGAAACTAATAATGAAAACGATGATGATATGGATGATAATTAATTAATTA
TATAATAACTTTTTTTTA
sequence update 1998. 4.22
Translated Amino Acid sequence
---SLKDGYGIAGWDVKSIHSYRYLKILQTGPNQRDGNELCLCCFEVYGRLVSLEDDNNN
TTCSSLTDGESDDDEMKNTTSHIDDDDSDNEDVNDNNNGDDSDETNNENDDDMDDN*lii
**lff


Translated Amino Acid sequence (All Frames)
Frame A:
---SLKDGYGIAGWDVKSIHSYRYLKILQTGPNQRDGNELCLCCFEVYGRLVSLEDDNNN
TTCSSLTDGESDDDEMKNTTSHIDDDDSDNEDVNDNNNGDDSDETNNENDDDMDDN*lii
**lff


Frame B:
---p*rmvmvslvgmlkvfipivi*ksfklvqinvmvmnfvyvvskfmvv*sl*kmiiti
qhvqv*qmvkvmmmk*kiqlhiltmmivtmkmsmtitmamivmklimktmmiwmiin*ly
nnffl


Frame C:
---lkgwlwyrwlgc*kysflslfknpsnwskst*w**tlfmlfrslwsfslfrr***qy
nmfkfnrw*k****nekynfty*r****q*rcq*q*qwr****n***kr**yg**linyi
itff


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM771 (SSM771Q) /CSM/SS/SSM7-C/SSM771Q.Seq.d/ 712 0.0
SLC128 (SLC128Q) /CSM/SL/SLC1-B/SLC128Q.Seq.d/ 712 0.0
SLB292 (SLB292Q) /CSM/SL/SLB2-D/SLB292Q.Seq.d/ 704 0.0
SLB415 (SLB415Q) /CSM/SL/SLB4-A/SLB415Q.Seq.d/ 696 0.0
CHD613 (CHD613Q) /CSM/CH/CHD6-A/CHD613Q.Seq.d/ 630 e-180
SLJ648 (SLJ648Q) /CSM/SL/SLJ6-B/SLJ648Q.Seq.d/ 359 2e-98
CHP480 (CHP480Q) /CSM/CH/CHP4-D/CHP480Q.Seq.d/ 246 2e-64
SHB412 (SHB412Q) /CSM/SH/SHB4-A/SHB412Q.Seq.d/ 40 0.023
CFF109 (CFF109Q) /CSM/CF/CFF1-A/CFF109Q.Seq.d/ 40 0.023
AHL287 (AHL287Q) /CSM/AH/AHL2-D/AHL287Q.Seq.d/ 40 0.023

own update 2004. 7.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 712 0.0 1
(AU034167) Dictyostelium discoideum slug cDNA, clone SLC128. 712 0.0 1
(C93205) Dictyostelium discoideum slug cDNA, clone SSM771. 712 0.0 1
(AU033669) Dictyostelium discoideum slug cDNA, clone SLB292. 704 0.0 1
(AU033767) Dictyostelium discoideum slug cDNA, clone SLB415. 696 0.0 1
(BJ376573) Dictyostelium discoideum cDNA clone:ddc29i04, 3' ... 630 e-177 1
(AU053769) Dictyostelium discoideum slug cDNA, clone SLJ648. 359 5e-95 1
(BJ383420) Dictyostelium discoideum cDNA clone:ddc52p20, 3' ... 246 5e-61 1
(EY344391) CAWZ13064.fwd CAWZ Helobdella robusta Primary Lat... 36 3e-04 3
(AC175884) Strongylocentrotus purpuratus clone R3-15B8, WORK... 40 6e-04 3
dna update 2009. 2.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AX647633_1(AX647633|pid:none) Sequence 1825 from Patent EP1270724. 44 0.002
U86962_1(U86962|pid:none) Dictyostelium discoideum MigA (migA) g... 36 0.35
AX647501_1(AX647501|pid:none) Sequence 1693 from Patent EP1270724. 35 0.61
AX647503_1(AX647503|pid:none) Sequence 1695 from Patent EP1270724. 34 1.4
(A9NEI9) RecName: Full=Cysteinyl-tRNA synthetase; EC=6.... 33 4.0
AE014134_1894(AE014134|pid:none) Drosophila melanogaster chromos... 32 8.6
AL844506_243(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 32 8.8
U28928_9(U28928|pid:none) Caenorhabditis elegans cosmid C44B7, c... 32 8.8
T15803(T15803)hypothetical protein C44B7.10 - Caenorhabditis ele... 32 8.8

protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.45 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLC128 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC128Z
3' end seq.
>SLC128Z.Seq
----------CTCCTTAAAGGATGGTTATGGTATCGCTGGTTGGGATGTTAAAAGTATTC
ATTCCTATCGTTATTTAAAAATCCTTCAAACTGGTCCAAATCAACGTGATGGTAATGAAC
TTTGTTTATGTTGTTTCGAAGTTTATGGTCGTTTAGTCTCTTTAGAAGATGATAATAACA
ATACAACATGTTCAAGTTTAACAGATGGTGAAAGTGATGATGATGAAATGAAAAATACAA
CTTCACATATTGACGATGATGATAGTGACAATGAAGATGTCAATGACAATAACAATGGCG
ATGATAGTGATGAAACTAATAATGAAAACGATGATGATATGGATGATAATTAATTAATTA
TATAATAACTTTTTTTTA
Length of 3' end seq. 368
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -