SLC122
Library SL
(Link to library)
Clone ID SLC122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLC122Z
(Link to Original site)
Representative DNA sequence
>SLC122 (SLC122Q) /CSM/SL/SLC1-A/SLC122Q.Seq.d/
XXXXXXXXXXTCCAGATTGTCCAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACC
ATGAATGCGTTTCAAGACGTGGTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTA
GATGGGGTGATGATCTCTCAGATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTG
ATGCTTATGAAGCCCAAAGGGGTCAAAGACCACATAATAATATTCCATCAAACAATTTAC
ATCAAGAAAACAATGATAATTTGGGTGATGGTTTTTATGATGGTCTCGAAATTGGTTTCG
CTGACGGAGGTTTCGACGTAAACGATCTCAATGGTTTTTA
sequence update 1998. 4.22
Translated Amino Acid sequence
---PDCPKLTCKQVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAID
AYEAQRGQRPHNNIPSNNLHQENNDNLGDGFYDGLEIGFADGGFDVNDLNGF


Translated Amino Acid sequence (All Frames)
Frame A:
---PDCPKLTCKQVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAID
AYEAQRGQRPHNNIPSNNLHQENNDNLGDGFYDGLEIGFADGGFDVNDLNGF


Frame B:
---qivqn*lvnklvaqktmnafqdvvnsivytldhqqvdgvmisqi*vtikqvlklqlm
lmkpkgvkdhiiifhqtiyikktmiiwvmvfmmvsklvsltevst*tismvf


Frame C:
---rlskinl*tswlprkp*mrfktw*tplcir*ttnr*mg**slrfrlqsskc*scn*c
l*spkgsktt**ysikqftsrkq**fg*wfl*wsrnwfr*rrfrrkrsqwfl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC122 (SLC122Q) /CSM/SL/SLC1-A/SLC122Q.Seq.d/ 654 0.0
SSH108 (SSH108Q) /CSM/SS/SSH1-A/SSH108Q.Seq.d/ 638 0.0
SLI370 (SLI370Q) /CSM/SL/SLI3-C/SLI370Q.Seq.d/ 638 0.0
SLI291 (SLI291Q) /CSM/SL/SLI2-D/SLI291Q.Seq.d/ 638 0.0
SLI170 (SLI170Q) /CSM/SL/SLI1-C/SLI170Q.Seq.d/ 638 0.0
SLH163 (SLH163Q) /CSM/SL/SLH1-C/SLH163Q.Seq.d/ 638 0.0
SLG187 (SLG187Q) /CSM/SL/SLG1-D/SLG187Q.Seq.d/ 638 0.0
SLF336 (SLF336Q) /CSM/SL/SLF3-B/SLF336Q.Seq.d/ 638 0.0
SLE234 (SLE234Q) /CSM/SL/SLE2-B/SLE234Q.Seq.d/ 638 0.0
SLE215 (SLE215Q) /CSM/SL/SLE2-A/SLE215Q.Seq.d/ 638 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034163) Dictyostelium discoideum slug cDNA, clone SLC122. 654 0.0 1
(AF066071) Dictyostelium discoideum SP85 (pspB) gene, comple... 638 e-179 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 638 e-179 1
(AU053311) Dictyostelium discoideum slug cDNA, clone SLI370. 638 e-179 1
(AU053270) Dictyostelium discoideum slug cDNA, clone SLI291. 638 e-179 1
(AU053222) Dictyostelium discoideum slug cDNA, clone SLI170. 638 e-179 1
(AU052929) Dictyostelium discoideum slug cDNA, clone SLF336. 638 e-179 1
(AU052495) Dictyostelium discoideum slug cDNA, clone SLD420. 638 e-179 1
(AU052457) Dictyostelium discoideum slug cDNA, clone SLD351. 638 e-179 1
(AU052420) Dictyostelium discoideum slug cDNA, clone SLD286. 638 e-179 1
dna update 2009. 2.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 241 7e-63
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 110 1e-23
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 42 0.006
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 36 0.46
Z50854_7(Z50854|pid:none) E.hirae arp[Q,R,S,T,U] genes. 35 1.0
(A5G2L3) RecName: Full=Holliday junction ATP-dependent DNA helic... 34 1.8
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 33 3.9
FM992690_507(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 3.9
EF371498_5(EF371498|pid:none) Myxococcus fulvus HW-1 MtsA (mtsA)... 32 5.1
CP001078_2527(CP001078|pid:none) Clostridium botulinum E3 str. A... 32 6.7
protein update 2009. 6. 1
PSORT

psg: 0.60 gvh: 0.31 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLC122 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC122Z
3' end seq.
>SLC122Z.Seq
----------TCCAGATTGTCCAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACC
ATGAATGCGTTTCAAGACGTGGTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTA
GATGGGGTGATGATCTCTCAGATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTG
ATGCTTATGAAGCCCAAAGGGGTCAAAGACCACATAATAATATTCCATCAAACAATTTAC
ATCAAGAAAACAATGATAATTTGGGTGATGGTTTTTATGATGGTCTCGAAATTGGTTTCG
CTGACGGAGGTTTCGACGTAAACGATCTCAATGGTTTTTA
Length of 3' end seq. 330
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -