SLC119
Library SL
(Link to library)
Clone ID SLC119
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLC119Z
(Link to Original site)
Representative DNA sequence
>SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/
XXXXXXXXXXTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCC
ACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAA
TCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGA
GCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTAC
CAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGC
TGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGC
AGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTC
CTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGC
TTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAG
CGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATC
ATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTG
ATCAAAAAA
sequence update 1998. 4.22
Translated Amino Acid sequence
---FNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAEL
SSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAG
TTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSA
PSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*sk


Translated Amino Acid sequence (All Frames)
Frame A:
---asivetvhtvlpimyshnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqs
yhqhvitle*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllq
vqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqva
lhplpqvvlhhhqlqvqlhhqlqaqkaqkahqplhk*nfdqk


Frame B:
---lq**krstlscq*cipttl*sysmsn*fll*nd*r*snly*skttgttttllnlcra
iism*srwndlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycr
ynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*r
silclk*csiiisfkfsciiscklrklrklishfinktlikk


Frame C:
---FNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAEL
SSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAG
TTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSA
PSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*sk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/ 1306 0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/ 1306 0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/ 1306 0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/ 1306 0.0
SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/ 1306 0.0
SLB244 (SLB244Q) /CSM/SL/SLB2-B/SLB244Q.Seq.d/ 1306 0.0
SLB211 (SLB211Q) /CSM/SL/SLB2-A/SLB211Q.Seq.d/ 1306 0.0
SLB171 (SLB171Q) /CSM/SL/SLB1-C/SLB171Q.Seq.d/ 1306 0.0
SLA710 (SLA710Q) /CSM/SL/SLA7-A/SLA710Q.Seq.d/ 1302 0.0
SLA473 (SLA473Q) /CSM/SL/SLA4-D/SLA473Q.Seq.d/ 1302 0.0

own update 2004. 5.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com... 1306 0.0 1
(AU034790) Dictyostelium discoideum slug cDNA, clone SLE334. 1306 0.0 1
(AU034767) Dictyostelium discoideum slug cDNA, clone SLE302. 1306 0.0 1
(AU034724) Dictyostelium discoideum slug cDNA, clone SLE241. 1306 0.0 1
(AU034161) Dictyostelium discoideum slug cDNA, clone SLC119. 1306 0.0 1
(AU033627) Dictyostelium discoideum slug cDNA, clone SLB244. 1306 0.0 1
(AU033595) Dictyostelium discoideum slug cDNA, clone SLB211. 1306 0.0 1
(AU033563) Dictyostelium discoideum slug cDNA, clone SLB171. 1306 0.0 1
(C89902) Dictyostelium discoideum slug cDNA, clone SSG603. 1306 0.0 1
(AU052267) Dictyostelium discoideum slug cDNA, clone SLA473. 1302 0.0 1
dna update 2009. 2.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 186 5e-46
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 186 5e-46
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 51 3e-05
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 51 3e-05
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 49 1e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 47 5e-04
Z98877_12(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com... 40 0.079
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 38 0.30
T27318(T27318)hypothetical protein Y69H2.3a - Caenorhabditis ele... 37 0.39
T27319(T27319)hypothetical protein Y69H2.3b - Caenorhabditis ele... 37 0.39
protein update 2009. 6. 1
PSORT

psg: 0.78 gvh: 0.43 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.14
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: cytoplasmic
24.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SLC119 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC119Z
3' end seq.
>SLC119Z.Seq
----------TGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCC
ACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAA
TCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGA
GCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTAC
CAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGC
TGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGC
AGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTC
CTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGC
TTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAG
CGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATC
ATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTG
ATCAAAAAA
Length of 3' end seq. 659
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -