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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC108
Library SL
(Link to library)
Clone ID SLC108
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09144-1
Original site URL
Representative seq. ID SLC108P
(Link to Original site)
Representative DNA sequence 
>SLC108 (SLC108Q) /CSM/SL/SLC1-A/SLC108Q.Seq.d/
GTTTTGCTTGGGTAATGAGAGCTTTCTTAATTTTATCAGGTCATATGGAGGAGGTTTCAA
TGTCATTGGATGAAGAGGGTCAATTGGTTGCAAGATTAACATGGAATGGTTTCAAACCAA
ATTCAAAACATCATCAAGATATAGCAATTAGAAAATATTTAGCACAACAATTCATTGGTA
ATGGTGTATTGGATTTTGATGAAACTAATAATCGTGAACATCAAGAGATTGTAAATAAAT
TAATTGAAAGATTTCCTCCACATTCAACCGTTGGTGATATTACTATCACAAGTGTACCAG
GTGTCGATAGTTCAGATCTTTTAAATTTCTCATCTGAAAGTTTATCCCTATTAGAGGATG
ATGCAAATGAAGCTGCTGAAATCTTAAAACGTTATGGAATTTCAATGGATCAAATGAGAG
CCAATGCACAACTACATCGTCAATTCATTGATGAATGGGTACCATTATCAACAACCTATT
CAAAAGAGAAATGTAATGCGATAAAGAAAGAAATTGGTGGTAAAATTCATCCATTAATGT
TAAATTAAGAGGTCCAGGTAATCAATTCTTAAAGGATTTACAAXXXXXXXXXXGTTATCA
CCATTACATTGGTTATCAATTGGTGGTTATTTATTATTAAATGGTACAACCATTCAATAT
CAAAATAGAATATTAAAATTAATTCAATCATCTTATGAGAAAATTAATAATCTTTTATCA
ACAAATGAAAATGAAAATCAAAATGAAATGAAAACAACCAATTTCATTGGTGATCAACAA
TTGAATGATTTAATATTTAAAGATTTATCACAACAATTAGCACCAAGTAAAGCTCAATTT
AAAGATAGAAAGGGTAAAATGTTTAGTGTTAAAGCAAGTGAAGATCATGTTGAATCTGGT
GTAACTAGAAGAAAAGAACTTTTAATTCAATCAAAGAAAAATCAAATTATGAAATCAAGA
TCAATTGGTTTCAATTCAATCATTTCACCTTTAAAATCATCAATTGATTTAACTATTGAT
AATGTAAAGAAAATTCATTTAAATGAAATTCATCAAAATATTTTAAAATTAAGTAATATT
TCAACAACAACAACCACCACTACAACAACAACAACAATAAGTATTCAAGATATTAATATT
ATTATTGGTAAAATATTTAAATTATCAATTTTATCATTAGAATCAATTGTAAATATAATT
TATTCAAATTCAAAGAGTCAAGATATAAATCAACAAGAAATAAAT
sequence update 1999. 1.11
Translated Amino Acid sequence 
fclgnesflnfirsygggfnvig*rgsigckinmewfqtkfktssrysn*kifsttihw*
wcigf**n**s*tsrdck*in*kisstfnrw*yyyhkctrcr*frsfkfli*kfipirg*
ck*sc*nlktlwnfngsnesqctttssih**mgtiinnlfkrem*cdkernww*NSSINV
KLRGPGNQFLKDLQ---

---LSPLHWLSIGGYLLLNGTTIQYQNRILKLIQSSYEKINNLLSTNENENQNEMKTTNF
IGDQQLNDLIFKDLSQQLAPSKAQFKDRKGKMFSVKASEDHVESGVTRRKELLIQSKKNQ
IMKSRSIGFNSIISPLKSSIDLTIDNVKKIHLNEIHQNILKLSNISTTTTTTTTTTTISI
QDINIIIGKIFKLSILSLESIVNIIYSNSKSQDINQQEIN
Translated Amino Acid sequence (All Frames) 
Frame A:
vllg**els*fyqviwrrfqchwmkrvnwlqd*hgmvsnqiqniiki*qleni*hnnslv
mvywilmkliivnikrl*in*lkdflhiqplvillsqvyqvsivqif*ishlkvypy*rm
mqmkllks*nvmefqwik*epmhnyivnslmngyhyqqpiqkrnvmr*rkklvvkfih*c
*ikrsr*silkgft---

---vititlvinwwlfiikwynhsisk*nikinsiil*en**sfink*k*ksk*nennqf
hw*stie*fni*rfittistk*ssi*r*kg*nv*c*sk*rsc*iwcn*kkrtfnsikeks
nyeikinwfqfnhftfkiin*fny**ckensfk*nsskyfkik*yfnnnnhhynnnnnky
sry*yyyw*ni*iinfiirinckynlfkfkesrykstrnk

Frame B:
fclgnesflnfirsygggfnvig*rgsigckinmewfqtkfktssrysn*kifsttihw*
wcigf**n**s*tsrdck*in*kisstfnrw*yyyhkctrcr*frsfkfli*kfipirg*
ck*sc*nlktlwnfngsnesqctttssih**mgtiinnlfkrem*cdkernww*NSSINV
KLRGPGNQFLKDLQ---

---LSPLHWLSIGGYLLLNGTTIQYQNRILKLIQSSYEKINNLLSTNENENQNEMKTTNF
IGDQQLNDLIFKDLSQQLAPSKAQFKDRKGKMFSVKASEDHVESGVTRRKELLIQSKKNQ
IMKSRSIGFNSIISPLKSSIDLTIDNVKKIHLNEIHQNILKLSNISTTTTTTTTTTTISI
QDINIIIGKIFKLSILSLESIVNIIYSNSKSQDINQQEIN

Frame C:
fawvmraflilsghmeevsmsldeegqlvarltwngfkpnskhhqdiairkylaqqfign
gvldfdetnnrehqeivnklierfpphstvgdititsvpgvdssdllnfsseslslledd
aneaaeilkrygismdqmranaqlhrqfidewvplsttyskekcnaikkeiggkihplml
n*evqvins*riy---

---yhhyigyqlvviyy*mvqpfnikiey*n*fnhlmrkliifyqqmkmkikmk*kqpis
lvinn*mi*ylkiyhnn*hqvklnlkiervkclvlkqvkimlnlv*leeknf*fnqrkik
l*nqdqlvsiqsfhl*nhqli*llim*rkfi*mkfikif*n*vifqqqqpplqqqqq*vf
kililllvkylnyqfyh*nql*i*fiqiqrvki*inkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC108 (SLC108Q) /CSM/SL/SLC1-A/SLC108Q.Seq.d/                       1372   0.0
CFH470 (CFH470Q) /CSM/CF/CFH4-C/CFH470Q.Seq.d/                         44   0.005
VSD625 (VSD625Q) /CSM/VS/VSD6-B/VSD625Q.Seq.d/                         40   0.080
VSD520 (VSD520Q) /CSM/VS/VSD5-A/VSD520Q.Seq.d/                         40   0.080
VSA715 (VSA715Q) /CSM/VS/VSA7-A/VSA715Q.Seq.d/                         40   0.080
VSA448 (VSA448Q) /CSM/VS/VSA4-B/VSA448Q.Seq.d/                         40   0.080
SSM347 (SSM347Q) /CSM/SS/SSM3-B/SSM347Q.Seq.d/                         40   0.080
SLF672 (SLF672Q) /CSM/SL/SLF6-C/SLF672Q.Seq.d/                         40   0.080
SHL467 (SHL467Q) /CSM/SH/SHL4-C/SHL467Q.Seq.d/                         40   0.080
SHC133 (SHC133Q) /CSM/SH/SHC1-B/SHC133Q.Seq.d/                         40   0.080
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060890) Dictyostelium discoideum slug cDNA, clone SLC108.     1156   0.0    1
(AU034153) Dictyostelium discoideum slug cDNA, clone SLC108.      335   0.0    5
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         38   0.002  11
(ER425415) 1092963746327 Global-Ocean-Sampling_GS-35-01-01-1...    38   0.007  3
(EJ684989) 1092955169348 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.012  3
(EJ731129) 1092960145415 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.013  3
(EJ841092) 1093017832915 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.014  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.015  13
(EJ462606) 1093023022918 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.016  3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.17   14
dna update 2009. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000501_35(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...    44   0.015
AE017243_92(AE017243|pid:none) Mycoplasma hyopneumoniae J, compl...    38   0.83
AL844505_96(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    37   1.4
CR548612_88(CR548612|pid:none) Paramecium tetraurelia macronucle...    37   1.8
AF250284_125(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    36   2.4
AE014187_377(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.4
AE014187_452(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.1
CP001131_460(CP001131|pid:none) Anaeromyxobacter sp. K, complete...    35   4.1
AF067946_5(AF067946|pid:none) Caenorhabditis elegans cosmid W02G...    35   4.1
AL844505_120(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.1
protein update 2009. 6. 1
PSORT 

 psg: 0.66  gvh: 0.49  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLC108 is cyt
5' end seq. ID SLC108F
5' end seq. 
>SLC108F.Seq
GTTTTGCTTGGGTAATGAGAGCTTTCTTAATTTTATCAGGTCATATGGAGGAGGTTTCAA
TGTCATTGGATGAAGAGGGTCAATTGGTTGCAAGATTAACATGGAATGGTTTCAAACCAA
ATTCAAAACATCATCAAGATATAGCAATTAGAAAATATTTAGCACAACAATTCATTGGTA
ATGGTGTATTGGATTTTGATGAAACTAATAATCGTGAACATCAAGAGATTGTAAATAAAT
TAATTGAAAGATTTCCTCCACATTCAACCGTTGGTGATATTACTATCACAAGTGTACCAG
GTGTCGATAGTTCAGATCTTTTAAATTTCTCATCTGAAAGTTTATCCCTATTAGAGGATG
ATGCAAATGAAGCTGCTGAAATCTTAAAACGTTATGGAATTTCAATGGATCAAATGAGAG
CCAATGCACAACTACATCGTCAATTCATTGATGAATGGGTACCATTATCAACAACCTATT
CAAAAGAGAAATGTAATGCGATAAAGAAAGAAATTGGTGGTAAAATTCATCCATTAATGT
TAAATTAAGAGGTCCAGGTAATCAATTCTTAAAGGATTTACAA----------
Length of 5' end seq. 583
3' end seq. ID SLC108Z
3' end seq. 
>SLC108Z.Seq
----------GTTATCACCATTACATTGGTTATCAATTGGTGGTTATTTATTATTAAATG
GTACAACCATTCAATATCAAAATAGAATATTAAAATTAATTCAATCATCTTATGAGAAAA
TTAATAATCTTTTATCAACAAATGAAAATGAAAATCAAAATGAAATGAAAACAACCAATT
TCATTGGTGATCAACAATTGAATGATTTAATATTTAAAGATTTATCACAACAATTAGCAC
CAAGTAAAGCTCAATTTAAAGATAGAAAGGGTAAAATGTTTAGTGTTAAAGCAAGTGAAG
ATCATGTTGAATCTGGTGTAACTAGAAGAAAAGAACTTTTAATTCAATCAAAGAAAAATC
AAATTATGAAATCAAGATCAATTGGTTTCAATTCAATCATTTCACCTTTAAAATCATCAA
TTGATTTAACTATTGATAATGTAAAGAAAATTCATTTAAATGAAATTCATCAAAATATTT
TAAAATTAAGTAATATTTCAACAACAACAACCACCACTACAACAACAACAACAATAAGTA
TTCAAGATATTAATATTATTATTGGTAAAATATTTAAATTATCAATTTTATCATTAGAAT
CAATTGTAAATATAATTTATTCAAATTCAAAGAGTCAAGATATAAATCAACAAGAAATAA
AT
Length of 3' end seq. 652
Connected seq. ID SLC108P
Connected seq. 
>SLC108P.Seq
GTTTTGCTTGGGTAATGAGAGCTTTCTTAATTTTATCAGGTCATATGGAGGAGGTTTCAA
TGTCATTGGATGAAGAGGGTCAATTGGTTGCAAGATTAACATGGAATGGTTTCAAACCAA
ATTCAAAACATCATCAAGATATAGCAATTAGAAAATATTTAGCACAACAATTCATTGGTA
ATGGTGTATTGGATTTTGATGAAACTAATAATCGTGAACATCAAGAGATTGTAAATAAAT
TAATTGAAAGATTTCCTCCACATTCAACCGTTGGTGATATTACTATCACAAGTGTACCAG
GTGTCGATAGTTCAGATCTTTTAAATTTCTCATCTGAAAGTTTATCCCTATTAGAGGATG
ATGCAAATGAAGCTGCTGAAATCTTAAAACGTTATGGAATTTCAATGGATCAAATGAGAG
CCAATGCACAACTACATCGTCAATTCATTGATGAATGGGTACCATTATCAACAACCTATT
CAAAAGAGAAATGTAATGCGATAAAGAAAGAAATTGGTGGTAAAATTCATCCATTAATGT
TAAATTAAGAGGTCCAGGTAATCAATTCTTAAAGGATTTACAA----------GTTATCA
CCATTACATTGGTTATCAATTGGTGGTTATTTATTATTAAATGGTACAACCATTCAATAT
CAAAATAGAATATTAAAATTAATTCAATCATCTTATGAGAAAATTAATAATCTTTTATCA
ACAAATGAAAATGAAAATCAAAATGAAATGAAAACAACCAATTTCATTGGTGATCAACAA
TTGAATGATTTAATATTTAAAGATTTATCACAACAATTAGCACCAAGTAAAGCTCAATTT
AAAGATAGAAAGGGTAAAATGTTTAGTGTTAAAGCAAGTGAAGATCATGTTGAATCTGGT
GTAACTAGAAGAAAAGAACTTTTAATTCAATCAAAGAAAAATCAAATTATGAAATCAAGA
TCAATTGGTTTCAATTCAATCATTTCACCTTTAAAATCATCAATTGATTTAACTATTGAT
AATGTAAAGAAAATTCATTTAAATGAAATTCATCAAAATATTTTAAAATTAAGTAATATT
TCAACAACAACAACCACCACTACAACAACAACAACAATAAGTATTCAAGATATTAATATT
ATTATTGGTAAAATATTTAAATTATCAATTTTATCATTAGAATCAATTGTAAATATAATT
TATTCAAATTCAAAGAGTCAAGATATAAATCAACAAGAAATAAAT
Length of connected seq. 1235
Full length Seq ID -
Full length Seq. -
Length of full length seq. -