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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC105
Library SL
(Link to library)
Clone ID SLC105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16399-1
Original site URL
Representative seq. ID SLC105Z
(Link to Original site)
Representative DNA sequence 
>SLC105 (SLC105Q) /CSM/SL/SLC1-A/SLC105Q.Seq.d/
XXXXXXXXXXTGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCACCACAA
GGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTGCA
TCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTTTC
TTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAACCA
CTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTTAT
GCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCCCA
ATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCATT
TCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATTCA
ATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATGGTATTAATTTAATTCAAAAATAT
TTTGAACAATTTACAAAATTAGATATTATTAAATCTGATTTAGAATAAAAATTAAAAAAA
AATAAAAAAATAAAAAAAATAAAAATAAAAAAATAAAACCAAAATCAAAATCAAAAACAA
CCAAA
sequence update 1998. 4.22
Translated Amino Acid sequence 
---NVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFL
ISADMAHAIHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPI
QEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYF
EQFTKLDIIKSDLE*klkknkkikkikikk*nqnqnqkqp
Translated Amino Acid sequence (All Frames) 
Frame A:
---ecdiir**rgwlkfttrcmctidq*yh*scq*lnvcihl*tt*ikqfh*fnfkk*fl
nlc*ygtcyssklhsks*tts*tss**rssnqi*ckftlcfkwsn*fcylgyl*kewypn
sriprqk*ftmwfnnwsnhfwylwy*ncryw*stiinafns*nlwcc*yhswy*fnskif
*tiykiryy*i*frikikkk*knkknknkkikpkskskttk


Frame B:
---NVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFL
ISADMAHAIHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPI
QEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYF
EQFTKLDIIKSDLE*klkknkkikkikikk*nqnqnqkqp


Frame C:
---m*yysimkrlaqvhhkvhvhh*smiplvvsiaqclhplvnhmn*tisli*l*eivs*
slliwhmlfiqitqqimnhfidqllikvq*snimqiyvmlqmvqlvllswisvkrmvsqf
knssskmihhvvqqlvqsflvlmvlel*ilvihnyqciqfvklvvllislmvli*fknil
nnlqn*illnli*nkn*kkikk*kk*k*knktkikiknnq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE843 (VFE843Q) /CSM/VF/VFE8-B/VFE843Q.Seq.d/                       1142   0.0
SSF820 (SSF820Q) /CSM/SS/SSF8-A/SSF820Q.Seq.d/                       1142   0.0
SSC761 (SSC761Q) /CSM/SS/SSC7-C/SSC761Q.Seq.d/                       1142   0.0
SLC105 (SLC105Q) /CSM/SL/SLC1-A/SLC105Q.Seq.d/                       1142   0.0
SLB311 (SLB311Q) /CSM/SL/SLB3-A/SLB311Q.Seq.d/                       1142   0.0
SFG834 (SFG834Q) /CSM/SF/SFG8-B/SFG834Q.Seq.d/                       1142   0.0
AFN567 (AFN567Q) /CSM/AF/AFN5-C/AFN567Q.Seq.d/                       1142   0.0
SSC531 (SSC531Q) /CSM/SS/SSC5-B/SSC531Q.Seq.d/                       1136   0.0
SFK775 (SFK775Q) /CSM/SF/SFK7-D/SFK775Q.Seq.d/                       1136   0.0
AFN694 (AFN694Q) /CSM/AF/AFN6-D/AFN694Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034150) Dictyostelium discoideum slug cDNA, clone SLC105.     1142   0.0    1
(AU033682) Dictyostelium discoideum slug cDNA, clone SLB311.     1142   0.0    1
(C92676) Dictyostelium discoideum slug cDNA, clone SSF820.       1142   0.0    1
(C92006) Dictyostelium discoideum slug cDNA, clone SSC761.       1142   0.0    1
(BJ427982) Dictyostelium discoideum cDNA clone:ddv10f12, 3' ...  1142   0.0    1
(BJ400677) Dictyostelium discoideum cDNA clone:dds14d10, 3' ...  1142   0.0    1
(BJ345705) Dictyostelium discoideum cDNA clone:dda28e17, 3' ...  1142   0.0    1
(C84043) Dictyostelium discoideum slug cDNA, clone SSC531.       1136   0.0    1
(BJ401300) Dictyostelium discoideum cDNA clone:dds22f19, 3' ...  1136   0.0    1
(BJ345811) Dictyostelium discoideum cDNA clone:dda28k24, 3' ...  1136   0.0    1
dna update 2009. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase;          EC=3.4....   391   e-107
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c...   200   3e-50
EU954490_1(EU954490|pid:none) Zea mays clone 1468685 unknown mRNA.    194   1e-48
BT062007_1(BT062007|pid:none) Zea mays full-length cDNA clone ZM...   194   1e-48
AB026632_4(AB026632|pid:none) Arabidopsis thaliana genomic DNA, ...   187   2e-46
AM494966_233(AM494966|pid:none) Leishmania braziliensis chromoso...   187   3e-46
AY085075_1(AY085075|pid:none) Arabidopsis thaliana clone 126533 ...   186   7e-46
CR954212_224(CR954212|pid:none) Ostreococcus tauri strain OTTH05...   184   2e-45
CP000592_232(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   183   3e-45
AP007151_1241(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   183   3e-45
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC105 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC105Z
3' end seq. 
>SLC105Z.Seq
----------TGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCACCACAA
GGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTGCA
TCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTTTC
TTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAACCA
CTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTTAT
GCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCCCA
ATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCATT
TCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATTCA
ATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATGGTATTAATTTAATTCAAAAATAT
TTTGAACAATTTACAAAATTAGATATTATTAAATCTGATTTAGAATAAAAATTAAAAAAA
AATAAAAAAATAAAAAAAATAAAAATAAAAAAATAAAACCAAAATCAAAATCAAAAACAA
CCAAA
Length of 3' end seq. 655
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -