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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC104
Library SL
(Link to library)
Clone ID SLC104
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15892-1
Original site URL
Representative seq. ID SLC104P
(Link to Original site)
Representative DNA sequence 
>SLC104 (SLC104Q) /CSM/SL/SLC1-A/SLC104Q.Seq.d/
CAATTCCGTGCGCTTTGTATGAGAAGTTGGTTATCTCGGTTGAGGCGTCCAGCAATATTC
GTTTCAAATTGTATACGATCAATTTTGTTGGCAGTCCTATTAGGTACACTATTTGTTCGT
ATGGATTATGAACAAAAGGATGCAAGATCTCGTGTTTCATTACTCTTCTTTTCGTTCCTT
TTTGCCGGTATGGTCGCAATTGGTAATATTCCAACAACAGTATTAGAAAGAGGTGTATTC
TATCGTGAGGTCACTGCAGGTTTCTATCATTCAACGGCATATATGACATCATATGTATTA
ACATCATATCCATTTACTTTATCCACTGGTATTCTTTATATTATTCCAACATTTTGGATT
GCTGGTCTGGATTCTGGTCGACATTCATCTAAATTTTGGTATTGTCTATTCATTTTCATT
ATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGGCGGTTTGCTTACCAAATGAA
GTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCTCAACATTATTTGGTGGTTCG
TCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTGGCTCA
GGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTTXXXXXXXXXXCATTTTCA
TTATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGGCGGTTTGCTTACCAAATG
AAGTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCTCAACATTATTTGGTGGTT
TCGTCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTGGC
TCAGGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTTTAACATTTGTTTGTA
CAAATAATAAAGGTGCTGTACCAATTCCAATCATTGAAAATGGTGTTCAAATAGCGATTA
AATATTATTGTCCAATTACAAATGGTGATGATTTCATGTTAACATATGGTTTCCATAAAT
TCATGAGATATATTGATATTGCTGCTATCTTTGGTTACATTTTCATTTTTGTTGGTTTAA
GTTTCTGGGGTTTCAAAAAAATTAGATGGTTCAATCGTTAATCATCTCAAAATTAAATAT
ATTCAAAAAATAAAAAAGAAAAATAAAAAATAAAAAAAAATAATTAA
sequence update 1999. 1.11
Translated Amino Acid sequence 
ipcalyeklvisveassnirfklytinfvgspiryticsygl*tkgckiscfitllfvpf
crygrnw*ysnnsirkrcils*ghcrflsfngiydiiciniisiyfihwyslyysnildc
wsgfwstfi*ilvlsihfhyhlcyv*cvwfmsgglltk*SYGINNMWYWFITLNIIWWFV
IARPNYPSAYYWCHYLDWLRYPLEASCTNEFTG---

---IFIITYVMYDAFGLCLAVCLPNEVMASTICGIGLSLSTLFGGFVIARPNYPSAYYWC
HYLDWLRYPLEASCTNEFTGLTFVCTNNKGAVPIPIIENGVQIAIKYYCPITNGDDFMLT
YGFHKFMRYIDIAAIFGYIFIFVGLSFWGFKKIRWFNR*ssqn*iysknkkek*kikknn
*
Translated Amino Acid sequence (All Frames) 
Frame A:
qfralcmrswlsrlrrpaifvsncirsillavllgtlfvrmdyeqkdarsrvsllffsfl
fagmvaignipttvlergvfyrevtagfyhstaymtsyvltsypftlstgilyiiptfwi
agldsgrhsskfwyclfifiityvmydafglclavclpnevmasticgiglslstlfggs
slqdqiihlhiigvii*tgsgilwkhlvpmnsqv---

---hfhyhlcyv*cvwfmsgglltk*syginnmwywfitlniiwwfrhcktklsicillv
slfrlaqvsfgsilyq*ihrfniclyk**rcctnsnh*kwcsnsd*illsnykw**fhvn
iwfp*iheiy*yccylwlhfhfcwfkflgfqkn*mvqsliisklnifkk*krkiknkkk*
l

Frame B:
nsvrfv*evgylg*gvqqysfqivydqfcwqsy*vhylfvwimnkrmqdlvfhyssfrsf
lpvwsqlvifqqqy*kevysivrslqvsiiqrhi*hhmy*hhihllyplvffilfqhfgl
lvwilvdihlnfgivysfslspmlcmmrlvyvwrfayqmklwhqqyvvlvyhsqhylvvr
hcktklsicillvslfrlaqvsfgsilyq*ihr---

---IFIITYVMYDAFGLCLAVCLPNEVMASTICGIGLSLSTLFGGFVIARPNYPSAYYWC
HYLDWLRYPLEASCTNEFTGLTFVCTNNKGAVPIPIIENGVQIAIKYYCPITNGDDFMLT
YGFHKFMRYIDIAAIFGYIFIFVGLSFWGFKKIRWFNR*ssqn*iysknkkek*kikknn
*

Frame C:
ipcalyeklvisveassnirfklytinfvgspiryticsygl*tkgckiscfitllfvpf
crygrnw*ysnnsirkrcils*ghcrflsfngiydiiciniisiyfihwyslyysnildc
wsgfwstfi*ilvlsihfhyhlcyv*cvwfmsgglltk*SYGINNMWYWFITLNIIWWFV
IARPNYPSAYYWCHYLDWLRYPLEASCTNEFTG---

---fslspmlcmmrlvyvwrfayqmklwhqqyvvlvyhsqhylvvsslqdqiihlhiigv
ii*tgsgilwkhlvpmnsqv*hlfvqiikvlyqfqslkmvfk*rlniivqlqmvmisc*h
mvsins*dililllslvtfsfllv*vsgvskkldgsivnhlkikyiqkikkknkk*kkii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC104 (SLC104Q) /CSM/SL/SLC1-A/SLC104Q.Seq.d/                       2167   0.0
SSG104 (SSG104Q) /CSM/SS/SSG1-A/SSG104Q.Seq.d/                        989   0.0
AFC887 (AFC887Q) /CSM/AF/AFC8-D/AFC887Q.Seq.d/                        989   0.0
SSH219 (SSH219Q) /CSM/SS/SSH2-A/SSH219Q.Seq.d/                        934   0.0
CHK889 (CHK889Q) /CSM/CH/CHK8-D/CHK889Q.Seq.d/                        934   0.0
AFF329 (AFF329Q) /CSM/AF/AFF3-B/AFF329Q.Seq.d/                        934   0.0
AHB817 (AHB817Q) /CSM/AH/AHB8-A/AHB817Q.Seq.d/                        926   0.0
CHS454 (CHS454Q) /CSM/CH/CHS4-C/CHS454Q.Seq.d/                        918   0.0
AHF470 (AHF470Q) /CSM/AH/AHF4-C/AHF470Q.Seq.d/                        906   0.0
CHF458 (CHF458Q) /CSM/CH/CHF4-C/CHF458Q.Seq.d/                        858   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060889) Dictyostelium discoideum slug cDNA, clone SLC104.     1273   0.0    1
(AF482385) Dictyostelium discoideum ABC transporter AbcG6 (a...  1066   0.0    2
(AF482384) Dictyostelium discoideum ABC transporter AbcG5 (a...   932   0.0    2
(BJ350990) Dictyostelium discoideum cDNA clone:dda41l18, 3' ...   714   0.0    3
(BJ341500) Dictyostelium discoideum cDNA clone:dda6n22, 3' e...   872   0.0    2
(BJ378691) Dictyostelium discoideum cDNA clone:ddc32d16, 3' ...   769   0.0    3
(AU038062) Dictyostelium discoideum slug cDNA, clone SSH219.      872   0.0    3
(BJ348684) Dictyostelium discoideum cDNA clone:dda34b06, 3' ...   864   0.0    2
(AU034149) Dictyostelium discoideum slug cDNA, clone SLC104.      872   0.0    1
(C90021) Dictyostelium discoideum slug cDNA, clone SSG104.        872   0.0    1
dna update 2009. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TV1) RecName: Full=ABC transporter G family member 6; AltNam...   335   e-105
AF482384_1(AF482384|pid:none) Dictyostelium discoideum ABC trans...   331   e-102
(Q54TV2) RecName: Full=ABC transporter G family member 5; AltNam...   328   e-102
AF482394_1(AF482394|pid:none) Dictyostelium discoideum ABC trans...    88   4e-20
(Q9M2V5) RecName: Full=White-brown complex homolog protein 18;  ...    68   5e-15
(O80946) RecName: Full=White-brown complex homolog protein 1;  &...    68   3e-14
(Q9M2V7) RecName: Full=Probable white-brown complex homolog prot...    65   1e-13
AM423811_1(AM423811|pid:none) Vitis vinifera contig VV78X155349....    67   1e-13
AP003271_24(AP003271|pid:none) Oryza sativa Japonica Group genom...    59   2e-13
EU957023_1(EU957023|pid:none) Zea mays clone 1580753 ATPase, cou...    69   3e-13
protein update 2009. 6. 1
PSORT 

 psg: 0.97  gvh: 0.57  alm: 0.26  top: 0.50  tms: 0.27  mit: 0.34  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC104 is end
5' end seq. ID SLC104F
5' end seq. 
>SLC104F.Seq
CAATTCCGTGCGCTTTGTATGAGAAGTTGGTTATCTCGGTTGAGGCGTCCAGCAATATTC
GTTTCAAATTGTATACGATCAATTTTGTTGGCAGTCCTATTAGGTACACTATTTGTTCGT
ATGGATTATGAACAAAAGGATGCAAGATCTCGTGTTTCATTACTCTTCTTTTCGTTCCTT
TTTGCCGGTATGGTCGCAATTGGTAATATTCCAACAACAGTATTAGAAAGAGGTGTATTC
TATCGTGAGGTCACTGCAGGTTTCTATCATTCAACGGCATATATGACATCATATGTATTA
ACATCATATCCATTTACTTTATCCACTGGTATTCTTTATATTATTCCAACATTTTGGATT
GCTGGTCTGGATTCTGGTCGACATTCATCTAAATTTTGGTATTGTCTATTCATTTTCATT
ATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGGCGGTTTGCTTACCAAATGAA
GTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCTCAACATTATTTGGTGGTTCG
TCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTGGCTCA
GGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTT----------
Length of 5' end seq. 642
3' end seq. ID SLC104Z
3' end seq. 
>SLC104Z.Seq
----------CATTTTCATTATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGG
CGGTTTGCTTACCAAATGAAGTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCT
CAACATTATTTGGTGGTTTCGTCATTGCAAGACCAAATTATCCATCTGCATATTATTGGT
GTCATTATTTAGACTGGCTCAGGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAG
GTTTAACATTTGTTTGTACAAATAATAAAGGTGCTGTACCAATTCCAATCATTGAAAATG
GTGTTCAAATAGCGATTAAATATTATTGTCCAATTACAAATGGTGATGATTTCATGTTAA
CATATGGTTTCCATAAATTCATGAGATATATTGATATTGCTGCTATCTTTGGTTACATTT
TCATTTTTGTTGGTTTAAGTTTCTGGGGTTTCAAAAAAATTAGATGGTTCAATCGTTAAT
CATCTCAAAATTAAATATATTCAAAAAATAAAAAAGAAAAATAAAAAATAAAAAAAAATA
ATTAA
Length of 3' end seq. 535
Connected seq. ID SLC104P
Connected seq. 
>SLC104P.Seq
CAATTCCGTGCGCTTTGTATGAGAAGTTGGTTATCTCGGTTGAGGCGTCCAGCAATATTC
GTTTCAAATTGTATACGATCAATTTTGTTGGCAGTCCTATTAGGTACACTATTTGTTCGT
ATGGATTATGAACAAAAGGATGCAAGATCTCGTGTTTCATTACTCTTCTTTTCGTTCCTT
TTTGCCGGTATGGTCGCAATTGGTAATATTCCAACAACAGTATTAGAAAGAGGTGTATTC
TATCGTGAGGTCACTGCAGGTTTCTATCATTCAACGGCATATATGACATCATATGTATTA
ACATCATATCCATTTACTTTATCCACTGGTATTCTTTATATTATTCCAACATTTTGGATT
GCTGGTCTGGATTCTGGTCGACATTCATCTAAATTTTGGTATTGTCTATTCATTTTCATT
ATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGGCGGTTTGCTTACCAAATGAA
GTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCTCAACATTATTTGGTGGTTCG
TCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTGGCTCA
GGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTT----------CATTTTCA
TTATCACCTATGTTATGTATGATGCGTTTGGTTTATGTCTGGCGGTTTGCTTACCAAATG
AAGTTATGGCATCAACAATATGTGGTATTGGTTTATCACTCTCAACATTATTTGGTGGTT
TCGTCATTGCAAGACCAAATTATCCATCTGCATATTATTGGTGTCATTATTTAGACTGGC
TCAGGTATCCTTTGGAAGCATCTTGTACCAATGAATTCACAGGTTTAACATTTGTTTGTA
CAAATAATAAAGGTGCTGTACCAATTCCAATCATTGAAAATGGTGTTCAAATAGCGATTA
AATATTATTGTCCAATTACAAATGGTGATGATTTCATGTTAACATATGGTTTCCATAAAT
TCATGAGATATATTGATATTGCTGCTATCTTTGGTTACATTTTCATTTTTGTTGGTTTAA
GTTTCTGGGGTTTCAAAAAAATTAGATGGTTCAATCGTTAATCATCTCAAAATTAAATAT
ATTCAAAAAATAAAAAAGAAAAATAAAAAATAAAAAAAAATAATTAA
Length of connected seq. 1177
Full length Seq ID -
Full length Seq. -
Length of full length seq. -